Locus 109

Sequence ID 3R_DroMel_CAF1
Location 651,060 – 651,153
Length 93
Max. P 0.996144
window181

overview

Window 1

Location 651,060 – 651,153
Length 93
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 73.47
Mean single sequence MFE -37.76
Consensus MFE -11.10
Energy contribution -14.62
Covariance contribution 3.52
Combinations/Pair 1.39
Mean z-score -2.54
Structure conservation index 0.29
SVM decision value 2.66
SVM RNA-class probability 0.996144
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 651060 93 + 27905053
AACGUUUCGCCUUCCAGCUUCGGCAUCAGCCCC---CAAAGGGGAUUCUCCACUCG-------AGCGCUUUUCGCGGUGAGGGGGGCGGAGGAGGGAGAAAUG
..((((((.((((((.((....)).((.(((((---(...((((...)))).((((-------..(((.....))).)))))))))).)))))))).)))))) ( -48.20)
>DroSec_CAF1 71913 93 + 1
AACGUUUCGCCUUCCAGCUCCGGCAUCAGCCCC---CAAAGGGGAUUCUCCACUCG-------AGCGCUUUUCCCAGUGAGGGGGGUGGAGGAGGGAGAAAUG
..((((((.((((((.((....)).(((.((((---(.(..((((..(((.....)-------))......))))..)..))))).))).)))))).)))))) ( -39.40)
>DroSim_CAF1 68893 92 + 1
AACGUUUCGCCUUCCAGCUCCGGCAUCAGCCCC---CAAAGGGGAUUCUCCACUCG-------AGCGCUUUUCCCGGUGAGG-GGGUGGAGGAGGGAGAAAUG
..((((((.((((((.((....)).(((.((((---((..(((((..(((.....)-------)).....)))))..)).))-)).))).)))))).)))))) ( -40.50)
>DroYak_CAF1 76960 74 + 1
AACGUUUCGUUUUCCAGCCUUGCCAUCAGCCCC---CAAAGGAGAUUCUUC-UUCG-------AGGGCUCUUCCGGGUAAGUGGG------------------
.............(((..((((((...(((((.---(.((((((...))))-)).)-------.)))))......))))))))).------------------ ( -22.70)
>DroAna_CAF1 73913 98 + 1
AACGUUUCGUUUUCCAGCUCAGCCAUCAGGCCCCCACAAAAGAGAUUCUCCAUUCGAGAGUCGAGGGCUUUUCGGGUUUUUG-GGGUGUGAGUUGGAGA----
..........((((((((((((((....)))((((........(((((((.....)))))))(((((((.....))))))))-)))..)))))))))))---- ( -38.00)
>consensus
AACGUUUCGCCUUCCAGCUCCGGCAUCAGCCCC___CAAAGGGGAUUCUCCACUCG_______AGCGCUUUUCCCGGUGAGGGGGGUGGAGGAGGGAGAAAUG
..((((((.((((((.((((((((....))).........((((...))))..............((((......))))...)))))...)))))).)))))) (-11.10 = -14.62 +   3.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:27 2006