Locus 1081

Sequence ID 3R_DroMel_CAF1
Location 3,302,913 – 3,303,031
Length 118
Max. P 0.578182
window1750

overview

Window 0

Location 3,302,913 – 3,303,031
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.44
Mean single sequence MFE -31.23
Consensus MFE -20.98
Energy contribution -23.46
Covariance contribution 2.48
Combinations/Pair 1.09
Mean z-score -1.82
Structure conservation index 0.67
SVM decision value 0.09
SVM RNA-class probability 0.578182
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3302913 118 - 27905053
UUAUUGCUUUGAAUAAAGUUGAGGACUAUAAAAAAACUAGGUUUAGAAU--AGUCUGUUGUGGGCGUAUCAGAGGUUGCCGGCACGACUUAGUUACUCAACCAAGAACAAGCAAUAAAGG
(((((((((........((((((((((((....((((...))))...))--)))).((((((((((.((.....))))))..)))))).......)))))).......)))))))))... ( -30.96)
>DroSec_CAF1 6993 119 - 1
UUAUUGCUUUGAAUAAAGUUUAGGACUAUAAA-AAACUAGGUUUGGUACGGGGUCUUUUGUGGGCGGGUCAAAGGUUGCCCGCCGGACUUAGUUACUCAACCAAGAACAAGCAAUAAGGG
(((((((((.(.....((((...)))).....-...((.((((.(((((..(((((......(((((((........))))))))))))..).)))).)))).))..))))))))))... ( -36.00)
>DroSim_CAF1 5433 119 - 1
UUAUUGCUUUGAAUAAAGUUUAGGACUAUAAA-AAACGAGGUUUGGUUCGGGGUCUUUUGUGGGCGGGUCAAAGGUUGCCAGCCAGACUUAGUUACUCAACCAAGAACAAGCAAUAAAGG
(((((((((.(.....((((...)))).....-.(((.((((((((((.((.(.((((((.........)))))).).)))))))))))).))).............))))))))))... ( -29.20)
>DroEre_CAF1 4125 116 - 1
UUAUUGCUACGAAUAAAGUUUACGACUUUAA--AAACUAGGUUCGGUAU--AGUCUGUUGUGGGCGGGUCAAAGGUUUCCCGCCGAACUAAGUUACUCAACCGAGAACAAGCAAUAAAGG
((((((((.....(((((((...))))))).--.((((.((((((((..--.((((.....))))(((..........))))))))))).)))).(((....)))....))))))))... ( -35.10)
>DroYak_CAF1 9840 116 - 1
UCAAAGCAAUGAAUAAAGUUUACGACUAUAAA-AAACUAGGUUUGUAAU--AGUCUGUUGUGGGCGGGUCAAAGGUUUCCCGCUGGACUA-GUUACUCAACCAAGAAGAAGCAAUAAAAG
.....((.........((((...)))).....-...((.((((.(((((--(((((......((((((..........))))))))))).-)))))..)))).)).....))........ ( -24.90)
>consensus
UUAUUGCUUUGAAUAAAGUUUAGGACUAUAAA_AAACUAGGUUUGGUAU__AGUCUGUUGUGGGCGGGUCAAAGGUUGCCCGCCGGACUUAGUUACUCAACCAAGAACAAGCAAUAAAGG
(((((((.........((((...)))).........((.((((.((((...(((((...((((((((........)))))))).)))))....)))).)))).)).....)))))))... (-20.98 = -23.46 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:06 2006