| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,299,168 – 3,299,270 |
| Length | 102 |
| Max. P | 0.522476 |
| Location | 3,299,168 – 3,299,270 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.39 |
| Mean single sequence MFE | -32.42 |
| Consensus MFE | -19.55 |
| Energy contribution | -20.98 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3299168 102 + 27905053 GGAGUUCUCCACUGCACUCUCGACCUUUUCGCAGAGGUCCUCCAGCUGCUUGGCAACCUUGGAUACCGG-----------CUUCUUUCGGUCAGGCAGGGAAUUCACGACAUC .(((((((.............((((((......))))))......(((((((((......(((......-----------..)))....))))))))))))))))........ ( -30.00) >DroVir_CAF1 1576 111 + 1 CGCGUUUUGUGAUGCCUCGUUAACCUUCUCAGCAACUUCAUUCAGCUGUAUCGCCACCCCGGAUGACACUCGUUUUGCCGUCUCCUGUGUGGCGGCAGC--GGCGACUACUUU (((((((((.((..............)).))).)))........(((((..((((((.(.(((.(((............)))))).).)))))))))))--.)))........ ( -30.34) >DroSec_CAF1 3618 102 + 1 GGAGUUCUCCACUGCACUCUCGACCUUUUCGCCGAGGUCCUCCAGCUGUUUGGCAACCUUGGAGACCGG-----------CUUCUUUUGGUCAGGCAGGGAACUCACGACAUC .(((((((...((((.((...((((.....(((..((((.(((((((....))).....))))))))))-----------).......)))))))))))))))))........ ( -34.50) >DroSim_CAF1 2018 102 + 1 GGAGUUCUCCACGGCACUCUCGACCUUUUCGCCGAGGUCCUCCAGCUGUUUGGCAACCUUGGAGACCGG-----------CUUCUUUUGGUCAGGCAGGGAACUCACGACAUC .((((((.((..(((......).)).....(((..((((.(((((((....))).....))))))))((-----------((......)))).))).))))))))........ ( -33.80) >DroEre_CAF1 972 102 + 1 GGAGUUCUCCACUGCACUUUCUACCUUUUCGCCGAGGUCCUCCAGUUGCUUGGCAACCUUGGAGACCGG-----------CUUCCUUUGGUCAGGUAGGGAACUCACAACAUC .(((((((............((((((.....(((((((...((((....))))..))))))).((((((-----------......)))))))))))))))))))........ ( -33.60) >DroYak_CAF1 6743 102 + 1 GGAGUUCUCAACAGCACUCUCGACCUUUUCGCCAAGGUCAUCCAAUUGCUUGGCAACCUUUGAGACCGG-----------CUUCCUUUGGUCAGGCAGAGAACUCACAACAUC .((((((((............((((((......)))))).......((((((....)......((((((-----------......)))))))))))))))))))........ ( -32.30) >consensus GGAGUUCUCCACUGCACUCUCGACCUUUUCGCCGAGGUCCUCCAGCUGCUUGGCAACCUUGGAGACCGG___________CUUCCUUUGGUCAGGCAGGGAACUCACGACAUC .((((((((...(((................(((((((...((((....))))..))))))).((((((.................))))))..)))))))))))........ (-19.55 = -20.98 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:55 2006