| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,296,001 – 3,296,119 |
| Length | 118 |
| Max. P | 0.889241 |
| Location | 3,296,001 – 3,296,119 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 97.18 |
| Mean single sequence MFE | -39.70 |
| Consensus MFE | -34.97 |
| Energy contribution | -35.97 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3296001 118 + 27905053 GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACAAGGAGGCCGGACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGCGGCGGUGGCGGUGGCAAAGUUUUCCAUUUUCC (((.(((((.......)))))..(((..((.......(((((((.((....)).)).)))))..((((((((.........))))))))))..)))..)))................. ( -40.60) >DroSim_CAF1 52411 118 + 1 GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACGAGGAGGCCGGACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGCGGCGGUGGCGGUGGCAAAGUUUUCCAUUUUCC (((.(((((.......)))))..(((..((.......(((((((.((....)).)).)))))..((((((((.........))))))))))..)))..)))................. ( -40.60) >DroEre_CAF1 50790 115 + 1 GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACGAGGAGGCCGUACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGC---GGUGGCGGUGGCAAAGUUUUCCAUUUUCC .....................(((.((((((..((..((((((((((....))))).)))))..((((((((.........)))))---)))..)).)))))).)))........... ( -37.90) >consensus GCUGAAAUUAUAAAUCAAUUUAACGUUGCCAAACGAGGAGGCCGGACAAAAGUGCGAGCCUCGAGCCGCAUAGUAAGUAAAUGUGCGGCGGUGGCGGUGGCAAAGUUUUCCAUUUUCC (((.(((((.......)))))..(((..((.......(((((((.((....)).)).)))))..((((((((.........))))))))))..)))..)))................. (-34.97 = -35.97 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:51 2006