Locus 1073

Sequence ID 3R_DroMel_CAF1
Location 3,295,012 – 3,295,108
Length 96
Max. P 0.940288
window1734

overview

Window 4

Location 3,295,012 – 3,295,108
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 88.89
Mean single sequence MFE -41.03
Consensus MFE -32.06
Energy contribution -32.95
Covariance contribution 0.89
Combinations/Pair 1.07
Mean z-score -3.64
Structure conservation index 0.78
SVM decision value 1.29
SVM RNA-class probability 0.940288
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3295012 96 + 27905053
UCAUGCUGCUCGGCUCGGUGGCAAUGGCAAUGGCAUUGGCAAUAGCAAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCGGGCAUUUCAAC
......(((((((((.(((((((((((((..((((..(((..((....))...)))..))))))))).))))))))....)))))))))....... ( -40.70)
>DroSim_CAF1 49082 89 + 1
UCAUGCUGCUCGGCUCGGC-UCGGUGGCAAUGGCAUUGGC------AAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCGGGCAUUUCAAC
......((((((((.((((-(.(((((((((.((....))------..(((((((....).))))))))))))))))))))))))))))....... ( -42.90)
>DroEre_CAF1 49737 95 + 1
UCAUGCGGCUCGGCUCGGUGGCAAUGGCAUUGGCAAUGGCAAUGGGAAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCG-GCAUUUCAAC
..(((((((.(((((.(((((((((..(((((.(...).)))))....(((((((....).))))))))))))))))))))))).-))))...... ( -39.50)
>consensus
UCAUGCUGCUCGGCUCGGUGGCAAUGGCAAUGGCAUUGGCAAU_G_AAUGGCAGCUUUUGUCUGCUAGUUGCCAUCAGUUGGCCGGGCAUUUCAAC
.......((((((((.(((((((((((((..((((..(((.............)))..))))))))).))))))))....))))))))........ (-32.06 = -32.95 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:50 2006