Locus 107

Sequence ID 3R_DroMel_CAF1
Location 645,409 – 645,499
Length 90
Max. P 0.618561
window178

overview

Window 8

Location 645,409 – 645,499
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 77.14
Mean single sequence MFE -22.98
Consensus MFE -13.82
Energy contribution -14.60
Covariance contribution 0.78
Combinations/Pair 1.13
Mean z-score -1.47
Structure conservation index 0.60
SVM decision value 0.17
SVM RNA-class probability 0.618561
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 645409 90 + 27905053
AGGGCAUCGGAACGAAGGCCGAGUCCGAAAUUGUUGGCAAUGUCAAGUUGCUAA--GCGAAGAAAGCAGUCAUUAGACAUAA----AU-UUGAAUGU
.((((.((((........)))))))).......((((((((.....))))))))--((.......)).(((....)))....----..-........ ( -22.80)
>DroSec_CAF1 66080 90 + 1
AGGGCAUCGGAACGAAGGCCGAGUCCGCAUUUGUUGGCAAUGUCAAGUUGCUAA--GCGAAGAAAGCAGUCAUUAGACAUAA----AC-UUGAAUGU
.((((.((((........))))))))((((((.((((((((.....))))))))--((.......)).(((....)))....----..-..)))))) ( -25.90)
>DroSim_CAF1 63030 90 + 1
AGGGCAUCGGAACGAAGGCCGAGUCCGCAUUUGUUGGCAAUGUCAAGUUGCUAA--GCGAAGGAAGCAGUCAUUAGACAUAA----AC-UUGAAUGU
.((((.((((........))))))))((((((.((((((((.....))))))))--((.......)).(((....)))....----..-..)))))) ( -25.90)
>DroEre_CAF1 63650 95 + 1
AGGGCAUCGGAACGAAGGCCGAGCCCUCCAUUGUUGGCAAUGUCAAGUUGCUAU--GCGAAGAAAACAUUCAUUAGACAUAUGUACAUUUUAACAUU
(((((.((((........)))))))))....((((((.(((((((...(((((.--..(((.......)))..))).))..)).))))))))))).. ( -23.60)
>DroYak_CAF1 69489 92 + 1
AGGACAUCGGAACGAAGGCCGAACCCUCAACUGUUGGCAAAGACAAAUUGCUAU--GCGAAG---ACAUACAUUAGAUAUUAGGAGUUUUUGAAUGU
(((...((((........))))..))).......((((((.......)))))).--.(((((---((..................)))))))..... ( -13.37)
>DroAna_CAF1 67571 89 + 1
GAGGCAUUGGCACAAAAGCCGAUGCAUCGUUAGUUGGCAAUGUCAAGUUGCUAAAAGCGAAUAA--UUUCCAUUAAA-AUAA----UU-UAGUCUGG
...((((((((......)))))))).(((((..((((((((.....)))))))).)))))....--...((((((((-....----))-)))..))) ( -26.30)
>consensus
AGGGCAUCGGAACGAAGGCCGAGUCCGCAAUUGUUGGCAAUGUCAAGUUGCUAA__GCGAAGAAAGCAGUCAUUAGACAUAA____AU_UUGAAUGU
.((((.((((........))))))))........(((((((.....)))))))............................................ (-13.82 = -14.60 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:24 2006