| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,291,908 – 3,292,015 |
| Length | 107 |
| Max. P | 0.806403 |
| Location | 3,291,908 – 3,292,015 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 90.91 |
| Mean single sequence MFE | -19.24 |
| Consensus MFE | -18.46 |
| Energy contribution | -18.22 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3291908 107 - 27905053 CAUUUCCCACCAUUUCCCACCCUUUCCCUGGCUCCUAAGCACAUGACACAAGUUUGUGCAACACUUAAACUUUAAUUGUGCAAAGUU-UUUGACCAUGUCGUGUGAAU ....................((.......))........(((((((((((((((((..(((..............)))..))))...-))))....)))))))))... ( -17.64) >DroSec_CAF1 44829 101 - 1 CAUUUCCC------UGCCACCCUUUCCCUGGCUCCUAAGCACAUGACACAAGUUUGUGCAACACUUAAACUUUAAUUGUGCAAAGUU-UUUGACCAUGUCGUGUGAAU ........------.((((.........)))).......(((((((((((((((((..(((..............)))..))))...-))))....)))))))))... ( -21.34) >DroSim_CAF1 46002 102 - 1 CAUUUCCC------UCCCACCCUUUCCCUGGCUCCUAAGCACAUGACACAAGUUUGUGCAACACUUAAACUUUAAUUGUGCAAAGUUUUUUGACCAUGUCGUGUGAAU ........------......((.......))........(((((((((....((((..(((..............)))..))))(((....)))..)))))))))... ( -18.24) >DroEre_CAF1 46613 96 - 1 CAUUUCCC----------GC-CUUCCCCCUGCUCCUGAGCACACGACACAAGUUUGUGCAACACUUAAACUUUAAUUGUGCAAAGUU-UUUGACCAUGUCGUGUGAAU ........----------..-..................(((((((((((((((((..(((..............)))..))))...-))))....)))))))))... ( -19.34) >DroYak_CAF1 64217 97 - 1 CAUUCCCC----------GCCCUUUCCCUUGCUCCUGAGCACACGACACAAGUUUGUGCAACACUUAAACUUUAAUUGUGCAAAGUU-UUUGACCAUGUCGUGUGAAU .((((...----------............(((....)))((((((((((((((((..(((..............)))..))))...-))))....)))))))))))) ( -19.64) >consensus CAUUUCCC______U_CCACCCUUUCCCUGGCUCCUAAGCACAUGACACAAGUUUGUGCAACACUUAAACUUUAAUUGUGCAAAGUU_UUUGACCAUGUCGUGUGAAU .......................................(((((((((....((((..(((..............)))..))))(((....)))..)))))))))... (-18.46 = -18.22 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:44 2006