Locus 1063

Sequence ID 3R_DroMel_CAF1
Location 3,286,256 – 3,286,374
Length 118
Max. P 0.598403
window1719

overview

Window 9

Location 3,286,256 – 3,286,374
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 96.27
Mean single sequence MFE -30.33
Consensus MFE -27.63
Energy contribution -28.23
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.91
SVM decision value 0.13
SVM RNA-class probability 0.598403
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3286256 118 + 27905053
AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAA
.......(((.((((((((((..(((.((.....)).)))..((((((.....((((....)))).....))))))))))))))))....((((................))))))). ( -30.99)
>DroSec_CAF1 39314 118 + 1
AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGAAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAC
.......(((.((((((((((((.((((....)))).))((((...((((((..(.....).))))))..))))..))))))))))....((((................))))))). ( -29.79)
>DroSim_CAF1 40507 118 + 1
AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAC
.......(((.((((((((((..(((.((.....)).)))..((((((.....((((....)))).....))))))))))))))))....((((................))))))). ( -30.69)
>DroEre_CAF1 40915 116 + 1
AAAUGGAUUCGGGCAACGCCUGCCACUGGUUCCGGUUG--UUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGGGACAAAUACAAACGGCAGAAC
.......(((.((((((((..((.((((....)))).)--)(((((((.....((((....)))).....))))))).))))))))....((((..(........)....))))))). ( -30.90)
>DroYak_CAF1 58725 118 + 1
AAAUGGAUUCAGGCAACGCCUGCCACUGGUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCACAGACAAAUACAAACAGCAGAAC
...(((.....((((((((..((.((((....)))).)).((((((((.....((((....)))).....))))))))))))))))......)))....................... ( -29.30)
>consensus
AAAUGGAUUCGGGCAACGCUUGCCACUGCUUCCGGUUGUGUUUUGUUUUUGCCUGCAAAUCUGCAAAAGUAAACAAAAGUGUUGCCAACUUGCCAGAGACAAAUACAAACGGCAGAAC
.......(((.((((((((..((.((((....)))).)).((((((((.....((((....)))).....))))))))))))))))....((((................))))))). (-27.63 = -28.23 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:36 2006