Locus 1060

Sequence ID 3R_DroMel_CAF1
Location 3,283,936 – 3,284,056
Length 120
Max. P 0.855837
window1713

overview

Window 3

Location 3,283,936 – 3,284,056
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -36.58
Consensus MFE -32.76
Energy contribution -33.32
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.42
Structure conservation index 0.90
SVM decision value 0.81
SVM RNA-class probability 0.855837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3283936 120 - 27905053
UUCGACUUUAAUAAAGGCUCGCUAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGAUUAAUUGAAGGGCGGAAAAU
((((.(((((((.((.(((((((((((....))).)))).(((((((((.......)))))))........((((((......)))).)))).))))...)).)))))))..)))).... ( -34.50)
>DroSec_CAF1 37048 120 - 1
UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCGGAAAAU
((((.(((((((.........((((((....))))))((..(((((........(((((........)))))(((((.....)))))....)))))..))...)))))))..)))).... ( -37.40)
>DroSim_CAF1 38254 120 - 1
UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCGGAAAAU
((((.(((((((.........((((((....))))))((..(((((........(((((........)))))(((((.....)))))....)))))..))...)))))))..)))).... ( -37.40)
>DroEre_CAF1 38637 119 - 1
UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGGCUCUAAUUGGGA-ACAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCUGCAGAU
...............(((((.((((((....))))))((..(((((........(((((........)))))(((-(......))))....)))))..)).........)))))...... ( -34.90)
>DroYak_CAF1 56388 120 - 1
UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUGCGACUCUAAUUGGGAAAUAACUUUUCCACUGCUGAGUGGCUUAAUUGAAGGGCGGCAAAU
..(((((((....)))).)))((((((....))))))(((((((..........(((((((.((((......(((((.....)))))......)))).))..)))))..))))))).... ( -38.70)
>consensus
UUCGACUUUAAUAAAGGCUCGCAAGGCUGAGGCCUUGGCUGCUCGGAAUAAUGGCAAUUUCGACUCUAAUUGGGGAAUAACUUUUCCACCGCUGAGUGGCUUAAUUGAAGGGCGGAAAAU
.(((.(((((((.........((((((....))))))((..(((((........(((((........)))))(((((.....)))))....)))))..))...)))))))..)))..... (-32.76 = -33.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:31 2006