Locus 106

Sequence ID 3R_DroMel_CAF1
Location 641,315 – 641,419
Length 104
Max. P 0.506555
window177

overview

Window 7

Location 641,315 – 641,419
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.51
Mean single sequence MFE -32.07
Consensus MFE -20.92
Energy contribution -20.48
Covariance contribution -0.44
Combinations/Pair 1.36
Mean z-score -1.09
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.506555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 641315 104 - 27905053
--------GGCC---ACC-----GCCUCACAUAAUGAUCUGCGGUUCUGGGACACUGGCCGCAAUGCUUUUAUGGGGCAAGACCUGGCCUCCAUUAAUGUAGAGCUCAUCCUUCACGAUU
--------((((---(((-----((.(((.....)))...)))))...((....))))))((..(((....(((((((........))).))))....)))..))............... ( -29.40)
>DroVir_CAF1 72842 111 - 1
--------AGCAAC-UGCUUCCAGAUUCACAUGAUGAUCUGGGGCUCGGGCACGCUGGCCGCAAUGCUCUUGUGCGGCAGCACCUGGCCGCCGUUCACGUACAGCUCGUCCUUAACGAUA
--------.(.(((-.((..(((((((........)))))))(((.((((...((((.(((((.........))))))))).))))))))).)))).........((((.....)))).. ( -37.70)
>DroPse_CAF1 65015 107 - 1
--------AGGAAGAUCC-----CUCUCACAUGAUGAUCUGUGGCUCGGGCACACUGGCCGCGAUGCUUUUGUGGGGCAGCACUUGGCCCCCAUUCACAUAGAGCUCAUCCUUUACAAUC
--------(((((((((.-----.((......)).)))))(((((.(((.....))))))))((.(((((((((((((........))))).....))).))))))).))))........ ( -35.70)
>DroWil_CAF1 63711 112 - 1
AAUGAUGAUGAC---AUC-----UUCUCACAUAAUAAUUUGCGGUUCCGGCACACUUGCCGCAAUGCUUUUGUGUGGCAACACUUGACCUCCGUUCACAUAGAGCUCAUCCUUAACAAUG
..(((.(((((.---...-----...((((((((....(((((((...(.....)..))))))).....))))))))...............((((.....))))))))).)))...... ( -25.70)
>DroAna_CAF1 63534 104 - 1
--------CCCC---AUC-----GGCUCACAUUAUAAUUUGUGGCUCGGGCACACUGGCCGCGAUGCUCUUAUGUGGCAGAACUUGGCCACCAUUGAUGUACAGCUCAUCCUUAACGAUC
--------....---...-----((((.((((((....(((((((.(((.....)))))))))).........(((((........)))))...))))))..)))).............. ( -28.20)
>DroPer_CAF1 65583 107 - 1
--------AGGAAGAUCC-----CUCUCACAUGAUGAUCUGUGGCUCGGGCACACUGGCCGCGAUGCUUUUGUGGGGCAGCACUUGGCCCCCAUUCACAUAGAGCUCAUCCUUUACAAUC
--------(((((((((.-----.((......)).)))))(((((.(((.....))))))))((.(((((((((((((........))))).....))).))))))).))))........ ( -35.70)
>consensus
________AGCA___ACC_____GUCUCACAUGAUGAUCUGUGGCUCGGGCACACUGGCCGCAAUGCUUUUGUGGGGCAGCACUUGGCCCCCAUUCACAUAGAGCUCAUCCUUAACAAUC
.......................................((((((.(((.....)))))))))..(((((((((((((........))))).....))).)))))............... (-20.92 = -20.48 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:23 2006