Locus 1059

Sequence ID 3R_DroMel_CAF1
Location 3,283,424 – 3,283,524
Length 100
Max. P 0.649311
window1712

overview

Window 2

Location 3,283,424 – 3,283,524
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 95.55
Mean single sequence MFE -30.40
Consensus MFE -25.18
Energy contribution -25.58
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.83
SVM decision value 0.24
SVM RNA-class probability 0.649311
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3283424 100 + 27905053
CGAAUGUGAAUGACAG-GACGAUAAGCGGACUGUUUUGGCCUGGUUUU-UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCA
....(((.((((((((-..((.....))..))))).(((((((..(((-.(((....))).)))...)))))))))).)))(((((.....)))))...... ( -33.30)
>DroSec_CAF1 36416 102 + 1
CGAAUGUGAAUGACAGCGCCGAUAAGCGGACUGUUUUGGCCUGGUUUUUUUUCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCU
....(((.((((((((..(((.....))).))))).(((((((...(((............)))...)))))))))).)))(((((.....)))))...... ( -26.90)
>DroSim_CAF1 37460 101 + 1
CGAAUGUGAAUGACAGCGCCGAUAAGCGGACUGUUUUGGCCUGGUUUU-UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCU
....(((.((((((((..(((.....))).))))).(((((((..(((-.(((....))).)))...)))))))))).)))(((((.....)))))...... ( -32.40)
>DroEre_CAF1 38267 100 + 1
CGAAUGUGAAUGACAG-GGCGAUAAGCGCACUGUUUUGGCCUGGUUUU-UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCG
....(((.((((((((-.(((.....))).))))).(((((((..(((-.(((....))).)))...)))))))))).)))(((((.....)))))...... ( -33.70)
>DroYak_CAF1 55950 100 + 1
CGAAUGUGAAUGACAG-GGCGAUAAGCGAACUGUUUUGGCCUGGUUUU-UUGCUUUAGCAUAAAUUACAGACCGAUUGACAACGCGGCGAAUGCGUAAUGCA
....(((.((((((((-..((.....))..))))).(((.(((..(((-.(((....))).)))...))).)))))).)))(((((.....)))))...... ( -25.70)
>consensus
CGAAUGUGAAUGACAG_GCCGAUAAGCGGACUGUUUUGGCCUGGUUUU_UUGCAUUAGCAUAAAUUACAGGCCGAUUGACAACGCGGCGAAUGCGUAAUGCA
....(((.((((((((...((.....))..))))).(((((((.......(((....))).......)))))))))).)))(((((.....)))))...... (-25.18 = -25.58 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:30 2006