Locus 1056

Sequence ID 3R_DroMel_CAF1
Location 3,279,930 – 3,280,047
Length 117
Max. P 0.999495
window1708

overview

Window 8

Location 3,279,930 – 3,280,047
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.14
Mean single sequence MFE -23.94
Consensus MFE -20.98
Energy contribution -20.54
Covariance contribution -0.44
Combinations/Pair 1.20
Mean z-score -2.62
Structure conservation index 0.88
SVM decision value 3.66
SVM RNA-class probability 0.999495
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3279930 117 - 27905053
UAACAGCAAUUAAAUUUAAAGAACAGCAGUUAAAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCGCAGAAAUACAAACAACAA
.....((..(((....)))......((((((((.(((.......(((........))).....))).)))))))).))...((((((........))))))................ ( -21.90)
>DroSec_CAF1 32980 117 - 1
GAACAGCAAUUAAGUUUCAAGAACAGCAGUUAGAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCACAGAAAUAAAAACAACAA
.............(((((.......((((((((.(((.......(((........))).....))).))))))))......((((((........)))))))))))........... ( -25.30)
>DroSim_CAF1 34068 117 - 1
GAACAGCAAUUAAAUUUCAAGAACAGCAGUUAGAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCGCAGAAAUAAAAACAACAA
.............(((((.......((((((((.(((.......(((........))).....))).))))))))......((((((........)))))))))))........... ( -24.60)
>DroEre_CAF1 34507 116 - 1
GAACAGCAAUUAAAUGGCAAAAACAGCAGUUAGAGCUGAAAAUAGGUUGAAGCACACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUAUUGCGCAGAA-AUAAAACAACAA
...((((..((((...((.......))..)))).)))).......((((.(((((((.......))))..))).))))...((((((((....))))))))...-............ ( -25.60)
>DroYak_CAF1 52471 117 - 1
GAACGGCAAUUAAAUUUUAAAAACAGCAGUUGGAAAUGAAAAUAGGUUGAAGCUUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCCAUUGCGCAGAAUAAAAAACAACAA
............................((((.............((((.((((.((.(.....).)).)))).))))...((((((((....))))))))..........)))).. ( -22.30)
>consensus
GAACAGCAAUUAAAUUUCAAGAACAGCAGUUAGAACUGAAAAUAGGUUGAAGCAUACCCAACAAGUGUUAGCUGCAGCAAAUGUGCAAUACCUACUGCGCAGAAAUAAAAACAACAA
.........................((((((((.(((.......(((........))).....))).))))))))......((((((........))))))................ (-20.98 = -20.54 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:26 2006