Locus 1055

Sequence ID 3R_DroMel_CAF1
Location 3,276,198 – 3,276,296
Length 98
Max. P 0.667397
window1707

overview

Window 7

Location 3,276,198 – 3,276,296
Length 98
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 76.49
Mean single sequence MFE -22.56
Consensus MFE -5.54
Energy contribution -8.02
Covariance contribution 2.48
Combinations/Pair 1.27
Mean z-score -1.77
Structure conservation index 0.25
SVM decision value 0.28
SVM RNA-class probability 0.667397
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3276198 98 - 27905053
AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACUAGGUACAA-AUUCGAUUGCAU-UCAGAUCUGGCCAUAUUUGACAA
.............((((((((((((((..(((((((....)))).(((......)))......-.)))..))))))-)....)))))))........... ( -22.60)
>DroSec_CAF1 29185 99 - 1
AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACAAGGUACAA-AUUCGCUUGUACCUCAGAUCUGGCGAUAUUUGAGAA
......(((((((.((((((..((...(((..((((....)))).))).......((((((((-......))))))))))..))))))....))))))). ( -29.60)
>DroSim_CAF1 30144 99 - 1
AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACGAGGUACAA-AUUCGCUUGUACCUCAGAUCUGACCAUAUUUGAAAA
.............(((((((.......(((..((((....)))).)))......(((((((((-......)))))))))...)))))))........... ( -32.10)
>DroEre_CAF1 30818 88 - 1
AGAAGCUCUUAAAGGUCAGAGAUGA----------ACUUACUUCACUGAGAAACUAGGUACAA-AUUCGCUUUUAC-UCAGAUCUAUUUACAUUUAAAGA
.((((......(((.(((....)))----------.))).)))).(((((.....((((....-....))))...)-))))................... ( -10.70)
>DroYak_CAF1 48761 78 - 1
AGAAGCUUUUAUAAGUCAGAGAUGAGUCAGAUGAAAUUUACUUUACUGAGAAGCUAGGUACAAAAUUCGCUUGUAC-UU---------------------
...(((((((...(((.((((.(((((........)))))))))))).)))))))((((((((.......))))))-))--------------------- ( -17.80)
>consensus
AGAAGCUCUUAAAGGUCAGAGAUGCGGCAGAGGAAGUUUACUUCACUGAGAAACUAGGUACAA_AUUCGCUUGUAC_UCAGAUCUGGCCAUAUUUGAAAA
.............(((((((..((...........((((.(((....)))))))...((((((.......))))))..))..)))))))........... ( -5.54 =  -8.02 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:25 2006