Locus 105

Sequence ID 3R_DroMel_CAF1
Location 635,646 – 635,744
Length 98
Max. P 0.625632
window176

overview

Window 6

Location 635,646 – 635,744
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 86.11
Mean single sequence MFE -37.90
Consensus MFE -33.74
Energy contribution -34.42
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.19
SVM RNA-class probability 0.625632
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 635646 98 + 27905053
CGACUUCGGGACCCCUUUUCGGGUGGUUAAUGAGGUGUGUGGACUACGGCACCAGAGGGAGGGGAUGGGUCGGUUAUCCGACUUGGUCUCCACUCGUU
..((((((.(((((((....))).))))..))))))((((.(....).))))....(((.((((((.((((((....))))).).)))))).)))... ( -37.10)
>DroSec_CAF1 56455 94 + 1
---CUUC-GCACCCCUUUUCGGGGGGUUAAUGAGGUGUGUGGACUACGGCACGAGAGGGAGGGAGAAGGUCGGGCAUCCGACUUGUUCUCCACUCGCU
---((((-(.((((((.....))))))...)))))(((((.(....).)))))..((.(((((((((((((((....))))))..)))))).))).)) ( -40.40)
>DroSim_CAF1 53072 94 + 1
---CUUC-GGACCCCUUUUCGGGGGGUUAAUGAGGUGUGUGGACUACGGCACGAGAGGGAGGGAGAAGGUCGGGCAUCCGACUUGUUCUCCACUCGCU
---((((-.(((((((.....)))))))...))))(((((.(....).)))))..((.(((((((((((((((....))))))..)))))).))).)) ( -42.10)
>DroEre_CAF1 54627 94 + 1
---UUUC-GGACUCCCUUUCAGGGUGUUAAUGAGGUGUGUGGACUAGGGCACAAGAGGGAGGGAGUGGGCCGGGUCCCCGACUUGUUUUCCACUCGCU
---....-...((((((((....(((((....((.........))..))))).)))))))).(((((((.((((((...))))))...)))))))... ( -32.00)
>consensus
___CUUC_GGACCCCUUUUCGGGGGGUUAAUGAGGUGUGUGGACUACGGCACGAGAGGGAGGGAGAAGGUCGGGCAUCCGACUUGUUCUCCACUCGCU
...((((..(((((((.....)))))))...)))).((((.(....).))))..(((((((((...(((((((....))))))).)))))).)))... (-33.74 = -34.42 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:22 2006