Locus 1048

Sequence ID 3R_DroMel_CAF1
Location 3,248,322 – 3,248,417
Length 95
Max. P 0.651942
window1696

overview

Window 6

Location 3,248,322 – 3,248,417
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 75.48
Mean single sequence MFE -24.15
Consensus MFE -12.83
Energy contribution -12.92
Covariance contribution 0.09
Combinations/Pair 1.37
Mean z-score -1.70
Structure conservation index 0.53
SVM decision value 0.25
SVM RNA-class probability 0.651942
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3248322 95 + 27905053
AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUCAAAGACAAACGA----CGGCCACAAAAUA--U-AAAAA
......................((.((((..(((((.(((.......))).))))).....(((..........))----))))).)).....--.-..... ( -23.20)
>DroGri_CAF1 1078 97 + 1
AUUUGGAUAAUCAUUCCUUUGAUGCCUGUUGCUUACUGGCACGCAAAUCAAUGGAUGGUAAGGGUA-----AUUGAGUAACAGUCGCAGACUGCUUAAUCAU
.........(((((.((.(((((...(((((((....)))).))).))))).))))))).......-----..(((.((((((((...))))).))).))). ( -21.90)
>DroSec_CAF1 1736 95 + 1
AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUAAAAGACAAACGA----AAGCCACAAAAUA--U-ACAAA
.......(((((.....((((.(((.(((..(((((.(((.......))).))))))))..............(..----..))))))))...--)-)))). ( -22.10)
>DroSim_CAF1 2392 95 + 1
AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUAAAAAACAAACGA----AGGCCCCAAAAUA--U-ACAAA
.......(((((..((....))((((((((.(((((.(((.......))).))))).....((.....))......----)))))))).....--)-)))). ( -30.70)
>DroEre_CAF1 2016 95 + 1
AUCUGAAUUUUAACUCAUUUGAUGGAGCUUGCUCCAUGGCACGAAUUGCCCUGGAGGGUAAGUUAAGUGUAAGCAA----AGGCCGCAAAAUA--U-AACAA
......(((((......((((((((((....)))))).((((...((((((....)))))).....))))...)))----)......))))).--.-..... ( -23.00)
>DroYak_CAF1 18151 95 + 1
AUCUGAAUUUUAACUCAUUCGAUGGAGCUUGCUCCAUGGCACGUAUUGCCCUGGAGGGUAAGUUAAAAUUUUACAA----AGGCCCCAAAACA--U-AACAA
....((((((((((.....(.((((((....)))))).)......((((((....)))))))))))))))).....----.............--.-..... ( -24.00)
>consensus
AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUAAAAAACAAACGA____AGGCCACAAAAUA__U_AAAAA
.................((((((((((....))))))(((.......((((....))))..((.........))........))).))))............ (-12.83 = -12.92 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:15 2006