Locus 1046

Sequence ID 3R_DroMel_CAF1
Location 3,246,594 – 3,246,698
Length 104
Max. P 0.853050
window1693

overview

Window 3

Location 3,246,594 – 3,246,698
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.15
Mean single sequence MFE -43.08
Consensus MFE -31.66
Energy contribution -32.92
Covariance contribution 1.25
Combinations/Pair 1.28
Mean z-score -2.00
Structure conservation index 0.73
SVM decision value 0.80
SVM RNA-class probability 0.853050
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3246594 104 + 27905053
UUAUCGGAAGGUCUCCAGGCACCAAUUGCUGGAGUGCAGCCUCAUCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAUCGUCUGGGCUCUAUGUACUCCGA
...(((((..((((((.(((.(((.....)))..(((((......))))))))...))))))...(((((((..(((((.....)))))..))))))).))))) ( -45.30)
>DroSec_CAF1 19 104 + 1
AUAUCCGAAGGUCUCCAGGCUCCAAUUGCCGGAGUGCAGCCUCAUCUGCAGCCAUGGGAGGCACAUGCGUGGUCCUCGGAUCGUCUGGGCUCCAUGUACUCCGA
.....((.((((((((.(((.......)))((..(((((......))))).))...))))))...(((((((..(((((.....)))))..))))))))).)). ( -41.20)
>DroSim_CAF1 673 104 + 1
AUAUCCGAAGGUCUCCAGGCUCCAAUUGCCGGAGUGCAGCCUCAUCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAUCGUCUGGGCUCCAUGUACUCCGA
.....((.((((((((.(((.......)))((..(((((......))))).))...))))))...(((((((..(((((.....)))))..))))))))).)). ( -44.20)
>DroEre_CAF1 318 104 + 1
UUAACGGAUGCUCACCUGGCUCCAAGUGCCGGAGUGCAGCCGCACCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAGCGUCUGGGCUCCAUGUAUUCCGA
....((((((((..(((((((.((.((((.((.......)))))).)).))))).))..)))).((((((((..(((((.....)))))..)))))))))))). ( -50.10)
>DroYak_CAF1 16426 104 + 1
UUAGCGGAUGGUUUCCAGGCUCCAAGUGCCGGAGUACAGCCGCACCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAACGCCUGGGCUCCAUGUACUCCGA
....((((((.((((((((((.((.((((.((.......)))))).)).)))).)))))).))..(((((((..(((((.....)))))..))))))).)))). ( -47.00)
>DroPer_CAF1 13 101 + 1
ACAUCUGAA---UUGCGAGCACCGACAGCCGGAAUUGUACCGCACCUGAGGCCAUGGGAAGUGAUUGCUUGGUCCCAAGAGCAGCUCGGAGGCAUCUACUCAGA
...(((((.---.(((((...(((.....)))..)))))..((..((((((((.((((((((....)))...))))).).))..)))))..))......))))) ( -30.70)
>consensus
AUAUCGGAAGGUCUCCAGGCUCCAAUUGCCGGAGUGCAGCCGCACCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAUCGUCUGGGCUCCAUGUACUCCGA
....((((..((((((.(((.......)))((..(((((......))))).))...))))))...(((((((..(((((.....)))))..))))))).)))). (-31.66 = -32.92 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:12 2006