Locus 1044

Sequence ID 3R_DroMel_CAF1
Location 3,242,709 – 3,242,809
Length 100
Max. P 0.852117
window1690

overview

Window 0

Location 3,242,709 – 3,242,809
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 96.33
Mean single sequence MFE -19.73
Consensus MFE -18.61
Energy contribution -18.50
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.09
Structure conservation index 0.94
SVM decision value 0.79
SVM RNA-class probability 0.852117
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3242709 100 + 27905053
AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU
.(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60)
>DroSec_CAF1 9765 100 + 1
AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU
.(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60)
>DroSim_CAF1 10047 100 + 1
AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU
.(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60)
>DroEre_CAF1 9910 100 + 1
AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU
.(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60)
>DroMoj_CAF1 11978 98 + 1
AGAAAGCAUCAGCUCCAAAGUUAUUAGAGCAAAAUUUUUGCCUUUGCCUAAGUAAUGGCCAAGUGCAUAUCU--CAGCACAUAUUGAGUUAUGACUUAAU
.....((....((((.((.....)).))))........((((((.(((........))).))).))).....--..))....(((((((....))))))) ( -20.40)
>DroPer_CAF1 9146 100 + 1
AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU
.(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60)
>consensus
AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU
...(((((..(((((((..((((((((.(((((.........))))))).))))))......((((..........))))...))))))).)).)))... (-18.61 = -18.50 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:09 2006