Locus 1042

Sequence ID 3R_DroMel_CAF1
Location 3,237,527 – 3,237,638
Length 111
Max. P 0.519284
window1687

overview

Window 7

Location 3,237,527 – 3,237,638
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 88.74
Mean single sequence MFE -30.06
Consensus MFE -19.48
Energy contribution -18.96
Covariance contribution -0.52
Combinations/Pair 1.30
Mean z-score -2.42
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.519284
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3237527 111 - 27905053
AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAGCUUUCGGUUACGCUCUUUGGUCAGGGCGAAGAUUGAACGCAGCAACCAUAGAAGAAAUAUAAAUAAAC
.(((.(((((..(((......((((((((((((....))))....(((((((.((((((......))))))..))))))).))))))))....)))..))))).))).... ( -31.30)
>DroSec_CAF1 4807 111 - 1
AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAACUUUCGGUUACGCUCUUUGGUCCGGGCGAAGAUUGAACGCAGCAACCAUAGAAGAAAUAAAAAUAAAC
......((((..(((......((((((((((((....))))....(((((((.(((((........)))))..))))))).))))))))....)))..))))......... ( -29.00)
>DroSim_CAF1 4852 111 - 1
AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAGCUUUCGGUUACGCUCUUUGGUCAGGACAGAGAGUGAACGCAGCAACCAUAGAAGAAAUAAAAAUAAAC
......((((..(((......((((((((((((....))))........(((.(((((((((.......))))))))))))))))))))....)))..))))......... ( -33.30)
>DroEre_CAF1 4797 110 - 1
AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCCCUAUUCAGCUUUUGGUUACGCUUCUUGGCCAGGGCCAAGAUUGAACGCGGCUGCCAUAAAG-AAAUAAAAAUAAAC
......((((..((((.((((((((....((...))....))))))))(((..(((.(((((((....)))))))......)))...))).)))).-.))))......... ( -27.30)
>DroYak_CAF1 4923 111 - 1
AAUUAAUAUUGAUUUACUAAAGUUGUGGCGGCUCUUUAGUCAGCUUUUGGUCACGCUUUUUGGUCAGGGCCAAGAUUGAACGCAGCUACCAUGAAAAAAGUAAAAAUAAAC
............((((((....(..(((..(((......((((.((((((((..(((....)))...))))))))))))....)))..)))..)....))))))....... ( -29.40)
>consensus
AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAGCUUUCGGUUACGCUCUUUGGUCAGGGCCAAGAUUGAACGCAGCAACCAUAGAAGAAAUAAAAAUAAAC
......((((..(((......((((((((((((....))))....(((((((..((((........))))...))))))).))))))))....)))..))))......... (-19.48 = -18.96 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:06 2006