| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,237,297 – 3,237,393 |
| Length | 96 |
| Max. P | 0.765802 |
| Location | 3,237,297 – 3,237,393 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -15.63 |
| Energy contribution | -15.50 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3237297 96 + 27905053 CCCCAGAAUGGAAAUUUCGUCGCCUCAGCGACGCAAGAUUGAAGCUUAUGUAAAUAGGGCUUUAAUCGAGA----UAUGACUCAAGUGCUAAUUAAAUAA ..((.....)).......(((((....)))))(((.(((((((((((((....))).))))))))))(((.----.....)))...)))........... ( -25.90) >DroPse_CAF1 4143 98 + 1 CUCC--AAUGGCAAUUUCCUCACUUCAAUGGCAAGAGAUUGAAGUUUAUGCAAAUAACACUUGGAGGGGGAAGAUUUUGAUAUAAGUGAUAAUUAAAUAA ...(--((...(..(..((((((((((((........))))))))((((....))))......))))..)..)...)))..................... ( -15.90) >DroSim_CAF1 4622 96 + 1 CCCCAGAAUGGAAAUUUCGUCGCCUCAGCGACGGAAGACUGAAGCUUAUGCAAAUAGGGCUUUAAUCGAGA----UAUGACUCAAGUGCUAAUUAAAUAA ..((.....))...(((((((((....)))))))))((.((((((((((....))).))))))).))(((.----.....)))................. ( -24.00) >DroEre_CAF1 4570 95 + 1 CCCUCGAAUGGAAAUUUCGUCGCCUCAGCGACGGAAGAUUGAAGCUUAUGCAAAUCG-GCUUUAAUCGAGA----UAUGACUGAAGAGCUAAUUAAAUAA ..(((.........(((((((((....)))))))))((((((((((.((....)).)-)))))))))))).----......................... ( -28.10) >DroYak_CAF1 4695 96 + 1 CCCUCGAAUGGAAAUUUCGUCGCCUCAGCGACGGAGGAUUGAAGUUUAUGCAAAUAGGGCUCUAAUCGAGA----UAUGACUCCAGAGCUAAUUAAAUAA .((((((((....))))((((((....))))))))))....................((((((....(((.----.....))).)))))).......... ( -25.30) >DroPer_CAF1 4123 98 + 1 CCCC--AAUGGCAAUUUUCUCACUUCAAUGGCAAGAGAUUGAAGUUUAUGCAAAUAACACUUUGAGGGGGAAGAUUUUGAUAUAAGUGAUAAUUAAAUAA ((((--.........(((((..((.....))..)))))(..((((((((....)))).))))..)))))............................... ( -16.00) >consensus CCCC_GAAUGGAAAUUUCGUCGCCUCAGCGACGGAAGAUUGAAGCUUAUGCAAAUAGGGCUUUAAUCGAGA____UAUGACUCAAGUGCUAAUUAAAUAA .((......))...(((((((((....)))))))))(((((((((((((....)))).)))))))))................................. (-15.63 = -15.50 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:05 2006