Locus 104

Sequence ID 3R_DroMel_CAF1
Location 633,152 – 633,264
Length 112
Max. P 0.809695
window175

overview

Window 5

Location 633,152 – 633,264
Length 112
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 85.59
Mean single sequence MFE -34.83
Consensus MFE -22.39
Energy contribution -25.07
Covariance contribution 2.67
Combinations/Pair 1.09
Mean z-score -2.89
Structure conservation index 0.64
SVM decision value 0.64
SVM RNA-class probability 0.809695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 633152 112 + 27905053
GAAUGGAAAAUGGU----GGUGCACAAAGGGUAAUCACCUCCUCAGUCGACUACUUGUACACCAUAUCGAUGUAGACAUCCUUUUUAAACUUUCUGAUAGGUUCAAUCUGCUAGCA
(((((((((...((----((((.(((...((((.((..((....))..)).))))))).))))))...((((....))))..........))))).....))))............ ( -19.60)
>DroSec_CAF1 49011 115 + 1
GAAUGGCAAAUGGUGUGUGGGUCAGAAAGGGUAUUGACUUCCGUAGUCGACUCCUUGUACACUAUAUCGGUGUAGACAUCCUUUUUAAACUUUCUGAUACGUCCA-UUUGCCAAUA
...(((((((((((((....(((((((((((..((((((.....))))))..)).(.((((((.....)))))).).............)))))))))))).)))-)))))))... ( -42.40)
>DroSim_CAF1 50647 115 + 1
GAAUGGCAAAUGGUGUGUGGGUCAGAAAGGGUAUUGACUUCCGUAGUCGACUCCUUGUACACUAUAUCGGUGUAGAUAUUCUUUUUAAACUUUCUGAUACGUCCA-UUUGCCAAUA
...(((((((((((((....(((((((((((..((((((.....))))))..)).(.((((((.....)))))).).............)))))))))))).)))-)))))))... ( -42.50)
>consensus
GAAUGGCAAAUGGUGUGUGGGUCAGAAAGGGUAUUGACUUCCGUAGUCGACUCCUUGUACACUAUAUCGGUGUAGACAUCCUUUUUAAACUUUCUGAUACGUCCA_UUUGCCAAUA
...((((((((((.......(((((((((((..((((((.....))))))..)).(.((((((.....)))))).).............)))))))))....))).)))))))... (-22.39 = -25.07 +   2.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:20 2006