| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,869,220 – 27,869,329 |
| Length | 109 |
| Max. P | 0.911104 |
| Location | 27,869,220 – 27,869,329 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -24.61 |
| Consensus MFE | -17.06 |
| Energy contribution | -18.03 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.911104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27869220 109 + 27905053 CACGGAGUGGUGGUCAAUUUGAACUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAAGAAAAAGGCCACCAAGAAGACCUAAGAAAAUGAACAAG ...((..((((((((....((.(((..((((((......))))))..))).))(((.....(....)....)))...))))))))......))................ ( -27.20) >DroSec_CAF1 179200 108 + 1 -ACGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAUGAAAAAGGCCACCAAGAAGACCUAAGGAAAUGAACAAA -..((..((((((((....((..((..((((((......))))))..))..))((((....(....)...))))...))))))))......))................ ( -29.70) >DroSim_CAF1 181434 108 + 1 -ACGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAUGAAAAAAGCCACCAAGAAGACCUAAGGAAAUGAACAAA -..((..(((((((.....((..((..((((((......))))))..))..))((((....(....)...))))....)))))))......))................ ( -26.20) >DroEre_CAF1 210294 106 + 1 CAAGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGCCCAUUCAAUCACGCAAGCACUGAAAAAAGCCAACAAAAAGACUUAAGGAAAAGA---GA ((..(..(((((((.....((.(((..((((((......))))))..))).))....))))).))..)..))................................---.. ( -21.10) >DroYak_CAF1 182665 108 + 1 CACGGAGUGGUGGUCAAUUUGAGCUCGUAGUGUUGUACUACACUGAAAGCCCAUUCAAUCACGCAAGGACUGAAAAACGCCACCAA-AAGUUCUAAGGAAGAGAACAGA .......(((((((.....((.(((..((((((......))))))..))).))((((.((.(....))).))))....))))))).-..(((((.......)))))... ( -32.80) >DroAna_CAF1 204675 97 + 1 -ACGGUACGUUGAUCAUCGCCAUACCGGAAUGUUGUACUACACUCAAAAUCCGUUCAACCACUCAAUCAAUGCAGAACAAAUACAAAAAUA-----G------AAAAUA -.(((((.(.((.....)).).)))))((.(((......))).)).......((((..................)))).............-----.------...... ( -10.67) >consensus _ACGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAUGAAAAAAGCCACCAAGAAGACCUAAGGAAAUGAACAAA .......(((((((.....((.(((..((((((......))))))..))).))((((....(....)...))))....)))))))........................ (-17.06 = -18.03 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:41 2006