Locus 10344

Sequence ID 3R_DroMel_CAF1
Location 27,851,128 – 27,851,225
Length 97
Max. P 0.731715
window16461

overview

Window 1

Location 27,851,128 – 27,851,225
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.92
Mean single sequence MFE -19.88
Consensus MFE -12.48
Energy contribution -13.01
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -2.65
Structure conservation index 0.63
SVM decision value 0.43
SVM RNA-class probability 0.731715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27851128 97 - 27905053
UUUGCGAGUAUUUUCUUUUAAUUUUUUC-----UCCCCUCAACUUUGCUGAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUG-CUUGCUUGG
...(((((((.((((((((((((((..(-----.............)..)))))))))..)))))........(((((.....)))))...))-))))).... ( -21.82)
>DroPse_CAF1 224183 100 - 1
GUUCUGAGUAUUUUCUUUUAAUUUUUUGUAUUUCCCCCUCAACUUU---GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUUCUUUGCUUUU
......((((.((((((((((((((..((............))...---)))))))))..)))))...)))).(((((.....)))))............... ( -16.70)
>DroWil_CAF1 210900 96 - 1
UCUUUCAGUAUUUUCUUUUAAUUUUUUU--UCCCCCCCUCAAGUUUG--GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGUGUGCUUC---UUACCUUA
.....(((((((((....((((((..((--(((.............)--))))..))))))))))))))).....(((((.....)))))..---........ ( -15.52)
>DroYak_CAF1 163109 98 - 1
UUUGUGAGUAUUUUCUUUUAAUUUUUUC-----UCCCCUCUACUUUGCUGAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUGGUUUGGUUUG
......((((.((((((((((((((..(-----.............)..)))))))))..)))))...)))).(((((.....)))))............... ( -16.42)
>DroAna_CAF1 165341 97 - 1
UUUGCGAGUAUUUUCUUUUAAUUUUCCC------GCCCCCAACUUUGGGGAAAUUAGAUUAGAAAUAUAGCUAGCAGCAUUCUGCUGGCUUUGGUUUGCUUUU
...(((((((((((..((((((((((((------(..........)))))))))))))...)))))))(((((((((....))))))))).....)))).... ( -32.10)
>DroPer_CAF1 228765 100 - 1
GUUCUGAGUAUUUUCUUUUAAUUUUUUGUAUUUCCCCCUCAACUUU---GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUUCUUUGCUUUU
......((((.((((((((((((((..((............))...---)))))))))..)))))...)))).(((((.....)))))............... ( -16.70)
>consensus
UUUGUGAGUAUUUUCUUUUAAUUUUUUC_____CCCCCUCAACUUUG__GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUG_UUUGCUUUU
......((((.((((((((((((((........................)))))))))..)))))...)))).(((((.....)))))............... (-12.48 = -13.01 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:29 2006