| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,225,020 – 3,225,116 |
| Length | 96 |
| Max. P | 0.533268 |
| Location | 3,225,020 – 3,225,116 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.77 |
| Mean single sequence MFE | -24.43 |
| Consensus MFE | -14.61 |
| Energy contribution | -17.17 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3225020 96 - 27905053 --------UGAAAUUUCGAAAAUCGAGGCCAUA-----UA-CUCUUAUACUCUCUUAUACUCUUAGUGUAUUAUC-AAAGGUGCGAAUUUUUUCGAGUGCAUUUCACCCCU --------(((((((((((((((((..((((((-----..-....))).......(((((.....))))).....-...))).)))...))))))))...))))))..... ( -16.70) >DroSec_CAF1 49622 111 - 1 AUUGGUGAAGAAAUUUCGAAAAUCGAGGCAAUUGGUGAUGCCUUUCAUACUUGGUGACCCAUUGAGUGUAUUAUCUAAAGGUGCGAAUUUUUUCGAGUGCAGUUCACCCCU ...((((((.....((((((((..((((((........))))))(((((((..(((...)))..)))))..((((....)))).))...)))))))).....))))))... ( -29.90) >DroSim_CAF1 50999 99 - 1 AUUGGUGAAGAAAUUUCGAAAAUCGAGGCAAUUGGUAAUGCCUUUCAUG------------UUGAGUGUAUUAUCUAAAAGUGCGAAUUUUUUCGAGUGCAGUUCACCCCU ...((((((.....((((((((.....(((...(((((((((((.....------------..))).))))))))......))).....)))))))).....))))))... ( -26.70) >consensus AUUGGUGAAGAAAUUUCGAAAAUCGAGGCAAUUGGU_AUGCCUUUCAUACU___U_A__C_UUGAGUGUAUUAUCUAAAGGUGCGAAUUUUUUCGAGUGCAGUUCACCCCU ...((((((.....((((((((..((((((........))))))......................((((((.......))))))....)))))))).....))))))... (-14.61 = -17.17 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:51 2006