Locus 10328

Sequence ID 3R_DroMel_CAF1
Location 27,750,714 – 27,750,808
Length 94
Max. P 0.565453
window16439

overview

Window 9

Location 27,750,714 – 27,750,808
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -29.15
Consensus MFE -20.10
Energy contribution -20.05
Covariance contribution -0.05
Combinations/Pair 1.05
Mean z-score -1.68
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.565453
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27750714 94 - 27905053
UG------------UCCCUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGGGUCGCUAGAU
.(------------.(((..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..))).)....... ( -29.60)
>DroPse_CAF1 72980 99 - 1
UGUGC------GCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCCACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUUGC-CCCCAGGAU
.....------.(((...(((....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))......))-)...))).. ( -29.10)
>DroGri_CAF1 77442 101 - 1
GGUGUGACCGUUGCCGUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU-CCG---GU-
((.....))...((((..((((...(((((((((((..(((...((.((((((.......))))))..)).)))...))))))))))).....)))-)))---))- ( -28.10)
>DroWil_CAF1 75633 95 - 1
U----------GCCUUCUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU-CCAUGGGAU
.----------.(((...((((...(((((((((((..(((...((.((((((.......))))))..)).)))...))))))))))).....)))-)...))).. ( -26.40)
>DroMoj_CAF1 80783 102 - 1
GGUAGGGCAGAGCCCGUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU-CCG---GUU
....((((.(((((....)))))..(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))......))-)).---... ( -31.90)
>DroPer_CAF1 72713 99 - 1
UGUGC------GCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCCACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUACCAAAUCGUGGC-CCCCAGGAG
.....------(((....)))....((((...))))....((((....(((((((.....((((...(((((......)))))))))...))))))-)....)))) ( -29.80)
>consensus
UGUG_______GCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU_CCGC_GGAU
.........................(((((((((((..(((...((.((((((.......))))))..)).)))...))))))))))).................. (-20.10 = -20.05 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:09 2006