Locus 1031

Sequence ID 3R_DroMel_CAF1
Location 3,220,435 – 3,220,536
Length 101
Max. P 0.896661
window1670

overview

Window 0

Location 3,220,435 – 3,220,536
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -39.80
Consensus MFE -38.87
Energy contribution -38.77
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.98
SVM decision value 0.99
SVM RNA-class probability 0.896661
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3220435 101 + 27905053
AGCGGCAAAUGAGAGCCCUCAGCUGAACUCUCUUGGCGUAGGUCGUAAACAGCUGCAGCUGAUGCGGUCGCCAGGAUGUUGGUCCUUCGGCUGCAACAUCA
.(((((...((((....))))((..(....(((((((...(..((((..((((....)))).))))..))))))))..)..))......)))))....... ( -36.20)
>DroEre_CAF1 39558 101 + 1
AGCGGCAAGUGAGAGCCCUCAGCUAACCUCUCUUGGCGUAGGUCGUAAACAGCUGCAGCUGAUGUGGUCGCCAGGAUGUUGGUCCUUCGGCUGCAGCAUCA
.(((.((((.((((((.....)))...))).)))).)))............(((((((((((...((..(((((....))))))).))))))))))).... ( -42.20)
>DroYak_CAF1 29892 101 + 1
AGCGACAAAUGAGAGCCCUCAGCUGAACUCUCUUGGCGUAGGUCGUAAACAGCUGCAGCUGAUGCGGUCGCCAGGAUGUUGGUCCUUCGGCUGCAGCAUCA
.(((((...((((....))))((..(......)..))....))))).....(((((((((((...((..(((((....))))))).))))))))))).... ( -41.00)
>consensus
AGCGGCAAAUGAGAGCCCUCAGCUGAACUCUCUUGGCGUAGGUCGUAAACAGCUGCAGCUGAUGCGGUCGCCAGGAUGUUGGUCCUUCGGCUGCAGCAUCA
.(((((...((((....))))(((((......)))))....))))).....(((((((((((...((..(((((....))))))).))))))))))).... (-38.87 = -38.77 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:49 2006