| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,646,122 – 27,646,212 |
| Length | 90 |
| Max. P | 0.890503 |
| Location | 27,646,122 – 27,646,212 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.52 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -18.52 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27646122 90 - 27905053 CCAUUUAUUUGUGAAUGGG--------AACUCCAGGCCUAGGAAGACAGCAGGACCAAAUGCCAGGAGAGGACGCCAUCGUCCUGCGCCAUUUCAAAG----- .......((((.((((((.--------..((((.(((...((............))....))).))))((((((....))))))...)))))))))).----- ( -25.70) >DroSec_CAF1 26373 98 - 1 CCAUUUAUUUGUGAAUGGCACUCAACCAACUCCAGGCCUAGGAAGACAGCAGGACCAGAUGCUAGGAGAGGAUGGCAUCGUCCUGCGCCAUUUCAAAG----- .......((((.(((((((...........(((.......))).....(((((((..(((((((........))))))))))))))))))))))))).----- ( -35.60) >DroSim_CAF1 30999 98 - 1 CCAUUUAUUUGUGAAUGGCACUCCACCAACUCCAGGGCUAGGAAGACAGCAGGACCAGAUGCCAGGAGAGGAUGGCAUCGUCCUGCGCCAUUUCAAAG----- .......((((.(((((((..(((.((.......))....))).....(((((((..(((((((........))))))))))))))))))))))))).----- ( -39.00) >DroEre_CAF1 26370 98 - 1 CCAUUUAUUUGUGAAUGGCACUCCACAAACUCCAUGCCCAAGAAGACAGGAGGACCAGUUGCCAGGAGGGAAGGCCAUCGUUCUGCGCCAUUUCAAAG----- .......((((.(((((((.((((.(((.((((.((.(......).))))))......)))...))))((((.(....).))))..))))))))))).----- ( -23.70) >DroYak_CAF1 26835 98 - 1 CCAUUUAUUUGUGAAUGGCACUCCACAAACUCCAGGCCUUCGAAGACAGGAGGCCCAGUUGCCAGGAGGGAACGCCAUCGUUCUGCGCCAUUUCAAAG----- .......((((.(((((((.((((...((((...(((((((.......))))))).))))....))))((((((....))))))..))))))))))).----- ( -37.50) >DroMoj_CAF1 33311 91 - 1 CCAUUUAUUUGUGAAUGGCACUCGAGUAACACACAG-AAAA-C---UUACAG-U-CAGAU----AGACAGAAUGCCG-CAUUCUGCGCCAACUUGAAACGCGG (((((((....)))))))...((((((.........-....-.---.....(-(-(....----.)))....((.((-(.....))).))))))))....... ( -17.50) >consensus CCAUUUAUUUGUGAAUGGCACUCCACAAACUCCAGGCCUAGGAAGACAGCAGGACCAGAUGCCAGGAGAGAAUGCCAUCGUCCUGCGCCAUUUCAAAG_____ .......((((.(((((((..........((((.(((.......................))).))))((((((....))))))..)))))))))))...... (-18.52 = -19.03 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:45 2006