| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,218,706 – 3,218,813 |
| Length | 107 |
| Max. P | 0.613153 |
| Location | 3,218,706 – 3,218,813 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -37.02 |
| Consensus MFE | -20.88 |
| Energy contribution | -21.19 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3218706 107 + 27905053 GGGGCGUAACGGACUGGCAGGGGGCGUGGCAGCG-CGGAACUGCAGCUGCGCCCUGUUGUGCUCCUGUCUACUCAGACGUCGUUGCAAUAUUUAGUGUAAAUUAAAAA .....((((((.((.....(((((((..((((((-(((........))))))..)))..)))))))((((....))))))))))))....((((((....)))))).. ( -39.80) >DroVir_CAF1 49105 89 + 1 ---GAGUAA-----------UGGGCGUGGCAG--CUGUAACUGCAGCUGUGCGCGACUUU---UGUGUCGCCUCAAAUGUCGCUGCAGUAUUUAGCGUAAAUUAAAAA ---...(((-----------(..((((.((((--((((....))))))))(((((((.((---((........)))).))))).))........))))..)))).... ( -31.50) >DroSec_CAF1 43436 107 + 1 GGCGCGUAGCGGACGGGCAGGGGGCGUGGCAGCG-CGGAACUACAGCUGCGCCCUGUUGUGCUCCUGUCUACUCAGACGUCGUUGCAAUAUUUAGUGUAAAUUAAAAA .....((((((.((.....(((((((..((((((-(((........))))))..)))..)))))))((((....))))))))))))....((((((....)))))).. ( -40.30) >DroSim_CAF1 44787 107 + 1 GGGGCGUAGCGGACGGGCAGGGGGCGUGGCAGAG-CGCAACUGCAGCUGCGCCCUGUUGUGCUCCUGUCUACUCAGACGUCGUUGCAAUAUUUAGUGUAAAUUAAAAA .....((((((.((.....(((((((..((((.(-((((.(....).))))).))))..)))))))((((....))))))))))))....((((((....)))))).. ( -43.30) >DroEre_CAF1 37758 99 + 1 GGGGCGCU--------CCUGGGGGCGUGGCAGCG-CGGAACUGCAGCUGCGCCCUGUUGUGCUGCUGUCUACUCAGACGUCGUUGCAAUAUUUAGUGGAAAUUAAAAA ((((((((--------(....))))...((((((-((....))).))))))))))(((((..((.(((((....))))).))..))))).((((((....)))))).. ( -39.10) >DroYak_CAF1 28082 92 + 1 -------U--------CCUGGGGGCGUGGCAGCG-CUGAGCUGCAGCUGCGCCCUGUUGUGCUGCUAUCUACUCAGACGUCGUUGCAAUAUUUAGUGUAAAUUAAAAA -------.--------.(((((...(((((((((-(.(.((.((....)))).)....))))))))))...)))))......(((((........)))))........ ( -28.10) >consensus GGGGCGUA________GCAGGGGGCGUGGCAGCG_CGGAACUGCAGCUGCGCCCUGUUGUGCUCCUGUCUACUCAGACGUCGUUGCAAUAUUUAGUGUAAAUUAAAAA ....................((((((..((...............))..))))))(((((.....(((((....))))).....))))).((((((....)))))).. (-20.88 = -21.19 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:43 2006