Locus 10267

Sequence ID 3R_DroMel_CAF1
Location 27,501,560 – 27,501,653
Length 93
Max. P 0.778762
window16359

overview

Window 9

Location 27,501,560 – 27,501,653
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 76.70
Mean single sequence MFE -28.07
Consensus MFE -20.97
Energy contribution -22.28
Covariance contribution 1.31
Combinations/Pair 1.37
Mean z-score -1.11
Structure conservation index 0.75
SVM decision value 0.55
SVM RNA-class probability 0.778762
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27501560 93 - 27905053
CAGGUUGUCCACUGUUAGUAAUUGAUUCUUCUUGUGAUGUGGGAGUGGCCACUGGAGGAAUACUCAAUCCGGCUAAAGGUGGGGGCAUCGAGA
..((((.((((((.(((((.((((((((((((......((((......)))).)))))))...)))))...))))).)))))).).))).... ( -28.40)
>DroSec_CAF1 24879 93 - 1
CAGGUUGUCUACUGUUAGUAAUUGAGUCUUCUUGUGAUGUGGGAGUGGCCACUGGCGGAAUACUCAGUCCGGCUAAAGGUGGGGGCAUCGAGA
..((((.((((((.(((((.(((((((.((((.((.(.((((......))))).)))))).)))))))...))))).)))))).).))).... ( -30.60)
>DroSim_CAF1 23928 93 - 1
CAGGUUGUCCACUGUUAGUAAUUGAGUCUUCUUGUGAUGUGGGAGUGGCCACUGGAGGAAUACUCAAUCCGGCUAAAGGUGGGGGCAUCGAGA
..((((.((((((.(((((.(((((((.(((((.(...((((......)))).).))))).)))))))...))))).)))))).).))).... ( -32.40)
>DroEre_CAF1 25079 93 - 1
CGGGUUGUCCGCAGUUAGUAAUUGAGUCCUCCUGUGAUGUGGAGCUGGCCAUUGGAGGAACACUAAAUCCGGCUAAUGGUGGGGGCAUAGACA
.(...(((((.(................((((........))))...((((((((.(((........)))..))))))))).)))))....). ( -27.10)
>DroWil_CAF1 62307 81 - 1
UAGAUUCAGCGCUUGAAGUU----AGUGUGCU-G-GAUGGUGGAG------UUGGUGGCACACUCAGAUCAGCUAGAGGCGGUGGUAAAGAUA
.....(((.(((((..((((----((((((((-(-(((......)------))..)))))))))......))))..))))).)))........ ( -21.30)
>DroYak_CAF1 25016 93 - 1
CGGGUUGACCACUGUUGGUAAUUGAGUCUUCCUGUGAUGUGGACGUGGCCAUUGGAGGAAUAGUCAAACCGGCUAGUGGCGGGGGCAUAGACA
....(((.(((((((((((..((((.(.(((((.(...((((......)))).).))))).).)))))))))).))))))))........... ( -28.60)
>consensus
CAGGUUGUCCACUGUUAGUAAUUGAGUCUUCUUGUGAUGUGGGAGUGGCCACUGGAGGAAUACUCAAUCCGGCUAAAGGUGGGGGCAUAGAGA
...(((.(((((..(((((.(((((((.(((((.(...((((......)))).).))))).)))))))...)))))..))))))))....... (-20.97 = -22.28 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:58 2006