| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,216,381 – 3,216,472 |
| Length | 91 |
| Max. P | 0.911900 |
| Location | 3,216,381 – 3,216,472 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 83.09 |
| Mean single sequence MFE | -21.42 |
| Consensus MFE | -18.13 |
| Energy contribution | -18.05 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3216381 91 - 27905053 CAGGCUCUGCAUUCAACAUACUUUGUGCGUUAAAAAUAUGUAAAAUUUUUUAACCGAAA-ACCUUUUCAAAAGAUUGCAGAGCUGGCGGAAC--------- ..(((((((((.((............(.((((((((..........)))))))))((((-....))))....)).)))))))))........--------- ( -23.40) >DroSec_CAF1 40993 91 - 1 CAGGCUCUGCAUUCAACAUACUUUGUGCGUUAAAAAUAUGUAAAAUAUUUUAACCGAAA-ACCUUUUCAAAAGAUUGCAGAGCUGGCGGAAC--------- ..(((((((((.((............(.(((((((.(((.....)))))))))))((((-....))))....)).)))))))))........--------- ( -23.40) >DroSim_CAF1 42371 91 - 1 CAGGCUCUGCAUUCAACAUACUUUGUGCGUUAAAAAUAUGUAAAAUAUUUUAACCGAAA-ACCUUUUCAAAAGAUUGCAGAGCUGGCGGAAC--------- ..(((((((((.((............(.(((((((.(((.....)))))))))))((((-....))))....)).)))))))))........--------- ( -23.40) >DroEre_CAF1 35428 90 - 1 CAGGCUCUGCAUUCAACAUACUUUGUGCGUUAAAAAUAUGUAAAAUAUUUUAAC-CGAA-ACCUUUUCAAAAGAUUGCAGAGCUGGCGGAAC--------- ..(((((((((.((.(((.....)))(.(((((((.(((.....))))))))))-)...-............)).)))))))))........--------- ( -22.80) >DroYak_CAF1 25746 89 - 1 CAGGCUUUGCAUUCAACAUACUUUGUGCGU-AAAAAUAUGUAAAAUAUUUUACC-GAAA-ACCUUUUUAAAAGAUUGCAGAGCUGGCGGAAC--------- ..(((((((((.((.(((.....))).((.-.(((((((.....)))))))..)-)...-............)).)))))))))........--------- ( -20.60) >DroMoj_CAF1 48703 88 - 1 CAG-CUUGGCAUUC-----------GCUUU-GGAAAUAUGCAAAAUAUUUUAACCGAAAAAACCUUUCAAAAGAUUGCAGAGGCAGAGGCGCGUAAUAUGU ...-....((((.(-----------(((((-((((((((.....))))))...)))))....((((((((....))).))))).......)))....)))) ( -14.90) >consensus CAGGCUCUGCAUUCAACAUACUUUGUGCGUUAAAAAUAUGUAAAAUAUUUUAACCGAAA_ACCUUUUCAAAAGAUUGCAGAGCUGGCGGAAC_________ ..(((((((((.((..................(((((((.....)))))))....((((.....))))....)).)))))))))................. (-18.13 = -18.05 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:41 2006