| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,452,665 – 27,452,771 |
| Length | 106 |
| Max. P | 0.589657 |
| Location | 27,452,665 – 27,452,771 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.99 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -13.63 |
| Energy contribution | -14.55 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27452665 106 + 27905053 AAGCAUCAAUGCCCUCGGCCGUUUUGCG---AAAA-UCCACCAAAAUAAUAUUGUUAUG-UACAU----U-UGUUAUGGACCUUGGUU-UUGGUCAAUGGUAAAUGGUCAGGGCUUU ..........(((((.((((((((....---....-...((((..((((((.(((....-.))).----.-)))))).((((......-..))))..)))))))))))))))))... ( -30.10) >DroSec_CAF1 8581 106 + 1 GAGCAUCAAUGCCCUCGGCCAUUUUGCG---AAAA-UCCACCAAAAUAAUAUUGUUAUG-UACAU----U-UGUUGUGGACCUUGGUU-UUGGUCAAUGGUAAAUGGCCAGGGCUUU ..........(((((.((((((((....---....-...((((..((((((.(((....-.))).----.-)))))).((((......-..))))..)))))))))))))))))... ( -33.20) >DroEre_CAF1 8558 86 + 1 -----------CUCUCGGCCGUUUUGCG---AAAA-UCCACCA--AUAAUAUUGUUAUG-UACAU----U-UGUUUUGGACCUUGGUU-UUGGUCA-------AUGGUCAGGGCUUU -----------((((.(((((((..((.---((((-.((((((--(.((((.(((....-.))).----.-))))))))....)))))-)).)).)-------)))))))))).... ( -21.10) >DroYak_CAF1 8639 100 + 1 CAGCAUCAAUGCUUUCGGCCGUUUUGCG---AAAA-UCCACCAAAAUAAUAUUGUUAUG-UACAU----U-UGUUGUGGACCUUGGUUUUUGGUCA-------AUGGUCAGGGCUUU ..........(((((.(((((((..((.---((((-.((((((.(((((...(((....-.))).----)-)))).)))....))).)))).)).)-------)))))))))))... ( -24.60) >DroAna_CAF1 8825 102 + 1 CAACAUUGAUGCUGACGGCCGUUUUGUG---GAAAUUCCACCAAAAUAAUAUUGUUAUG-UACAU----UUUGGUGUGGACCUUGGAUUUUGGUCA-------ACGGCUAGGGCUUU ..........(((...(((((((.....---.......(((((((((.((((....)))-)..))----)))))))..((((.........)))))-------))))))..)))... ( -27.20) >DroPer_CAF1 9585 101 + 1 CA--CUCACUGCUGACGGCCAUUUUGGGUGCAAAA-UCCACCAAAAUAAUAUUGUUAUGGUACACAUACU-ACUUGUACACGUUGGCCCUUGGUCA-------G-----AGAGCUUU ..--(((.((((..(.(((((((((((........-....))))))).........((((((((......-...))))).))).)))).)..).))-------)-----.))).... ( -27.40) >consensus CAGCAUCAAUGCUCUCGGCCGUUUUGCG___AAAA_UCCACCAAAAUAAUAUUGUUAUG_UACAU____U_UGUUGUGGACCUUGGUU_UUGGUCA_______AUGGUCAGGGCUUU ..........(((((.((((((..............................(((......)))..............((((.........))))........)))))))))))... (-13.63 = -14.55 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:32 2006