Locus 1023

Sequence ID 3R_DroMel_CAF1
Location 3,211,760 – 3,211,852
Length 92
Max. P 0.516391
window1657

overview

Window 7

Location 3,211,760 – 3,211,852
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -22.36
Consensus MFE -18.11
Energy contribution -17.68
Covariance contribution -0.44
Combinations/Pair 1.33
Mean z-score -1.41
Structure conservation index 0.81
SVM decision value -0.03
SVM RNA-class probability 0.516391
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3211760 92 - 27905053
UUAAGGUUUCGUUCUCCGAAUAAAAGUAUGCCAUGCACAUUUUCAUACCGAAUCAAAGGGCUGCGAAGCUCAGGCCCGUUUAGGCCGAACAA
....((((((((..(((........(((((.............))))).........)))..))))))))..((((......))))...... ( -21.95)
>DroSec_CAF1 36458 82 - 1
UUAAGGCUUCGUUCUCCGAGUAAAAGUAUGCCAUGCACAUUUUC----------AAAGGGUUACGAAGCUCAGGCCCAUUUAGGCCGAACAA
....((((((((..(((...(.(((((.(((...))).))))).----------)..)))..))))))))..((((......))))...... ( -25.50)
>DroSim_CAF1 37951 82 - 1
UUAAGGCUUCGUUCUCCGAGUAAAAGUAUGCCAUGCACAUUUUC----------AAAGGGCUGCGAAGCUCAGGCCCAUUUAGGCCGAACAA
....((((((((..(((...(.(((((.(((...))).))))).----------)..)))..))))))))..((((......))))...... ( -25.80)
>DroEre_CAF1 30390 73 - 1
UUAAGGCUAAGUACUCCGAGUGAAAGUGUGCCAUGCA-------------------AGGACUGUGAGGCUCAGGCCCAUUUAGGCCGAACAA
.....(((...(((.....)))..)))(.(((.((((-------------------.....)))).))).).((((......))))...... ( -16.20)
>consensus
UUAAGGCUUCGUUCUCCGAGUAAAAGUAUGCCAUGCACAUUUUC__________AAAGGGCUGCGAAGCUCAGGCCCAUUUAGGCCGAACAA
....((((((((..(((........................................)))..))))))))..((((......))))...... (-18.11 = -17.68 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:37 2006