Locus 10228

Sequence ID 3R_DroMel_CAF1
Location 27,417,162 – 27,417,282
Length 120
Max. P 0.870893
window16297

overview

Window 7

Location 27,417,162 – 27,417,282
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.50
Mean single sequence MFE -44.28
Consensus MFE -40.10
Energy contribution -40.74
Covariance contribution 0.64
Combinations/Pair 1.28
Mean z-score -1.49
Structure conservation index 0.91
SVM decision value 0.87
SVM RNA-class probability 0.870893
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27417162 120 - 27905053
CUGUCGUUGCUUCUUCCUGUCGGUCCCGCCAGCUAGGAUGCGCUUCUCCUCCUCGUUGGCAGGCUGAAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCAUUUCUCGCCGCCAUCAG
(((.((..(((((.(((((((((.((.((((((.((((...........)))).)))))).))))).))))))......))))))))))(((...(((((((.......))))))).))) ( -47.90)
>DroSec_CAF1 19260 120 - 1
CUGUCGCUGCUUUUUCCUGUCGGUCCCGCCAGCUAGGAUGAGCUUCUCCUCUUCGUUGGCAGGCUGAAUGGGAUUCACUGGGGCCGCAGCUGUGUUGGUGGCGUUUCUCGCGGCCAUCAG
((((.(((.(....(((((((((.((.((((((.((((.(((...))).)))).)))))).))))).))))))......).))).))))(((...((((.(((.....))).)))).))) ( -49.80)
>DroSim_CAF1 19083 120 - 1
CUGUCGUUGCUUUUUCCUGUCGGUCCCGCCAGCUAGGAUGAGCUUCUCCUCCUCGUUGGCAGGCUGAAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCGUUUCUCGCGGCCAUCAG
((((.(((.(....(((((((((.((.((((((.((((.(((...))).)))).)))))).))))).))))))......).))).))))(((...((((.(((.....))).)))).))) ( -50.10)
>DroEre_CAF1 19633 120 - 1
CUGUCGUUUCUUUUUUCUAUCUGCCCCGCCAGCUAGAAUGAGCUUCUCUUCGUCAUCGACAGGCUGUAUAGGAUUCACUGGAGCCGCUGCUGUGUUGGUGGCAUUUCUAGCCGCCAUUAG
((((((........(((((.(((......))).))))).(((...)))........))))))((.(((..((.(((....)))))..))).))..(((((((.......))))))).... ( -31.20)
>DroYak_CAF1 19500 120 - 1
CUGUCGUUGUUUUUUUCUAUCGGCUCCGCCGGCUAGGAUGACCUUCUCCUCCUCAUUGGCAGGCUGUAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCAUUUCUUGCCGCCAUUAG
((((.(((.(....(((((((((((..(((((..((((.((.....)).))))..))))).))))).))))))......).))).))))(((...((((((((.....)))))))).))) ( -42.40)
>consensus
CUGUCGUUGCUUUUUCCUGUCGGUCCCGCCAGCUAGGAUGAGCUUCUCCUCCUCGUUGGCAGGCUGAAUGGGAUUCACUGGAGCCGCAGCUGUGUUGGUGGCAUUUCUCGCCGCCAUCAG
((((.(((.(....(((((((((((..((((((.((((.(((...))).)))).)))))).))))).))))))......).))).))))(((...((((((((.....)))))))).))) (-40.10 = -40.74 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:52:03 2006