Locus 1019

Sequence ID 3R_DroMel_CAF1
Location 3,208,729 – 3,208,831
Length 102
Max. P 0.506147
window1647

overview

Window 7

Location 3,208,729 – 3,208,831
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -30.26
Consensus MFE -24.15
Energy contribution -24.40
Covariance contribution 0.25
Combinations/Pair 1.08
Mean z-score -1.49
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.506147
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3208729 102 - 27905053
GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAACGGAAGUGUAGGUUGAAGCUGGGGAAGCUGCUCUGCAGUUUGUGUCAGGGCCAACGAGCGCAUUU
((((..(((((..((..(........(((((((....).....))))))...((((((.(((......))).)))))).)..))..))).))..)))).... ( -31.10)
>DroSec_CAF1 28075 102 - 1
GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAGCUGGGGAAGCUGCUCGGCAUUUUGUGACAGGGCCAACGAGCGCAUUU
((((..(((((..((...(..(((..(((((.....((....))))))).....((((((.......)))))).)))..)..))..))).))..)))).... ( -31.60)
>DroSim_CAF1 34897 102 - 1
GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAGCUGGGGAAGCUGCUCUGCAGUUUGUGUCAGGGCCAACGAGCGCAUUU
((((..((.....((((..(((..(..((((((..(((((.......(((....))).......)))))))))))..)...)))..))))))..)))).... ( -31.54)
>DroEre_CAF1 27402 93 - 1
GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAG---GGGAACUUG-----CAG-UUGUGUCAGGGCCAACGAGCGCGUUU
((((..(((((..((..(.((.(((((((((.....((....))....)).....---))).)))).-----)).-...)..))..))).))..)))).... ( -26.80)
>consensus
GUGCAAGUGGUAAUGGUAAUGGAAGUCCUGCAGGAAGCGGAAGUGUAGGUGGAAGCUGGGGAAGCUGCUCUGCAGUUUGUGUCAGGGCCAACGAGCGCAUUU
((((..(((((..((..(........(((((.....((....)))))))............(((((((...))))))).)..))..))).))..)))).... (-24.15 = -24.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:28 2006