Locus 10167

Sequence ID 3R_DroMel_CAF1
Location 27,297,608 – 27,297,728
Length 120
Max. P 0.803277
window16181

overview

Window 1

Location 27,297,608 – 27,297,728
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.47
Mean single sequence MFE -22.95
Consensus MFE -17.92
Energy contribution -18.80
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.86
Structure conservation index 0.78
SVM decision value 0.62
SVM RNA-class probability 0.803277
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27297608 120 + 27905053
GCCUUUUGUCAGUUUAAGCUUACUUACUACAAACUAACUAAAGCAAAAAAACAUCUUGCAAUCUUAUUAAGAGCUACCUUGAUUAUGCAAAUGCCACCAACAAACUGUGCAUUAAAGGUU
(((((((((((((((..((((...................)))).......(((.(((((.....((((((......))))))..))))))))........)))))).)))..)))))). ( -21.31)
>DroSec_CAF1 2633 119 + 1
ACCUUUUGCCAGAUUAAGCUUAGUUACUACAAACUAAUUAAAGCAAUA-AGCAUCUUGCAAUCUUCUUAAGAGCUACCUUGAUUAUGCAAAUGCCACCAUCAAACUGUGCUUUAAAGGUU
((((((.(((((.....(((((((((........))))).))))....-.((((.(((((......(((((......)))))...)))))))))..........))).))...)))))). ( -25.00)
>DroSim_CAF1 3054 120 + 1
ACCUUUUGCCAGAUUAAGCUUAGUUACUACAAACUAAUUAAAGCAAUAAAGCAUCUUGCAAUCUUCUUAAGAGCUACCUUGAUUAUGCAAAUGCCGCCAACAAACUGUGCUUCAAAGGUU
((((((.(((((.....(((((((((........))))).))))......((((.(((((......(((((......)))))...)))))))))..........))).))...)))))). ( -24.30)
>DroEre_CAF1 2783 116 + 1
GUC-UUUGUUAGUUUAAGCUUAGUU---ACAAACUAAUUAAAGCAGUAAGACAUCUUGCAAUCUGUUUAAGAACAACCUUGAUUAUGCAAAUGCCGCGAACAAACUGUGCAUUAAAGGUU
.((-((...(((.....((((((((---(.....))))).)))).(((((....)))))...)))...))))..((((((....(((((..((.......)).....)))))..)))))) ( -21.20)
>consensus
ACCUUUUGCCAGAUUAAGCUUAGUUACUACAAACUAAUUAAAGCAAUAAAACAUCUUGCAAUCUUCUUAAGAGCUACCUUGAUUAUGCAAAUGCCACCAACAAACUGUGCAUUAAAGGUU
((((((.((((((((..(((((((((........))))).))))......((((.(((((......(((((......)))))...))))))))).......)))))).))...)))))). (-17.92 = -18.80 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:22 2006