Locus 10155

Sequence ID 3R_DroMel_CAF1
Location 27,276,812 – 27,276,910
Length 98
Max. P 0.586545
window16158

overview

Window 8

Location 27,276,812 – 27,276,910
Length 98
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 83.88
Mean single sequence MFE -19.38
Consensus MFE -14.47
Energy contribution -14.13
Covariance contribution -0.33
Combinations/Pair 1.20
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.11
SVM RNA-class probability 0.586545
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27276812 98 + 27905053
CUUAUUGAUUGGUUUUAAUUAGGAAAGCCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAUGUUUUUAUAGCACUUUUCCUC--CAC-----AUC-----CAC-
......((((((.....(((((..((((((((....((((.......))))))))))))..))))).((((.....))))........)--)).-----)))-----...- ( -19.60)
>DroPse_CAF1 80663 102 + 1
CUUAUUGAUUGGUUUUAAUUAGAAAAACCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UUCUU--UGCGCCAUUUC-----CGC-
....(((((.((((((.......))))))))))).(((((.......)))))(((((.......((((....)))).(((...-.....--))))))))...-----...- ( -19.50)
>DroWil_CAF1 50358 96 + 1
CUUGUUGAUUGGUUUUAAUUAGAGGAACCAUCGACCACAAAUUAGCCUUGCCAUGGCUUCAUUAAUAAGUUUUUAUUGCUCUU-UUUUU--UGU-----GUC-----GU--
...((((((.((((((.......))))))))))))((((((..((((.......))))....((((((....)))))).....-...))--)))-----)..-----..-- ( -19.40)
>DroYak_CAF1 54909 104 + 1
CUUAUUGAUUGGUUUUAAUUAGGAAAGCCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UCCACUCUCC-----AUCCCACUCAC-
.....(((.(((.....(((((..((((((((....((((.......))))))))))))..)))))..(((.....)))....-..........-----...))).))).- ( -20.90)
>DroAna_CAF1 54232 98 + 1
CUUAUUGAUUAGUUUUAAUUAGAAAAGCCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UUCUU--UUU-----CCC-----GAUU
......((..(((....(((((..((((((((....((((.......))))))))))))..)))))..(((.....)))))).-.))..--...-----...-----.... ( -17.40)
>DroPer_CAF1 76966 102 + 1
CUUAUUGAUUGGUUUUAAUUAGAAAAACCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU-UUCUU--UGCGCCAUUUC-----CGC-
....(((((.((((((.......))))))))))).(((((.......)))))(((((.......((((....)))).(((...-.....--))))))))...-----...- ( -19.50)
>consensus
CUUAUUGAUUGGUUUUAAUUAGAAAAACCAUCAACCGCAAAUUAGCCUUGCGAUGGCUUCAUUAAUAAGUUUUUAUAGCACUU_UUCUU__UGC_____AUC_____CAC_
((((((((((((((((.......))))))).............((((.......))))..))))))))).......................................... (-14.47 = -14.13 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:50:02 2006