Locus 1015

Sequence ID 3R_DroMel_CAF1
Location 3,206,220 – 3,206,340
Length 120
Max. P 0.703650
window1641

overview

Window 1

Location 3,206,220 – 3,206,340
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -32.02
Consensus MFE -26.08
Energy contribution -26.20
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -1.72
Structure conservation index 0.81
SVM decision value 0.36
SVM RNA-class probability 0.703650
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3206220 120 + 27905053
CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCGAGCUCAUGUGUCAGCUGAGAAAAUGCAUAUUAUUAAAUCCGAUCAAUGUGAUGCUGUCUUCCAUCACAGUAUUACUGCCU
.....(((((.((((((..((......))....((((....))))..)))))).)))))............................((((((((((........))))))))))..... ( -29.70)
>DroSec_CAF1 25598 120 + 1
CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGUUCGAGCUCAUGUGUCAGCUGAGAAAAUGCAUAUUAUUAAAUCCGAUCAAUGUGAUGGUGUCUCCCAUCGAAGUAUUACUGCCU
.........(((((((((.(.......(((((.(((((..(....(((((.((..........)))))))..)..))))))))))....(((((......)))))).))))))))).... ( -27.60)
>DroSim_CAF1 32454 120 + 1
CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCGAACUCAUGUGUCAGCUGAGAAAAUGCUUAUUAUUAAAUCCGAUCAAUGUGAUGGUGUCUCCCAUCGGAGUAUUACUGCCU
.........(((((((((((.((((((((((..((((.....((((.((....)))))).....)))))))).))))))..........(((((......)))))))))))))))).... ( -34.40)
>DroEre_CAF1 25165 120 + 1
UCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCCAACUCAUGUGUCCGCUGAGAAAGUGCGUAUUAUUAAAUCUGAUCAAUGUGAUGGGGUCUCCCGUCAUAUUAUCACUGUCU
.........((((((....((((((((((((..(.(((....((((.((....))))))..))).)..)))).))))))))...(((((((((((....))))))))))))))))).... ( -36.40)
>consensus
CCCACUUCAGGUGAUACUCCAGAUUUAUGAUUAGGGCUCGAACUCAUGUGUCAGCUGAGAAAAUGCAUAUUAUUAAAUCCGAUCAAUGUGAUGGUGUCUCCCAUCAAAGUAUUACUGCCU
.........((((((((....((((((((((....((.....((((.((....)))))).....))..)))).)))))).......((((((((......)))))))))))))))).... (-26.08 = -26.20 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006