| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,205,975 – 3,206,074 |
| Length | 99 |
| Max. P | 0.760178 |
| Location | 3,205,975 – 3,206,074 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -27.75 |
| Consensus MFE | -17.40 |
| Energy contribution | -18.23 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3205975 99 - 27905053 CUGACCACAAUGCAAACAUGACUUUGCAAUUAAGUUAUUGUCGGCCAGAAGGAACUAUCCGGCAGUCAUG------GGUCCUUGGAGUCUCACUUCGCC----------UCCU---U--U ..((((.((.((((((......))))))........((((((((..((......))..))))))))..))------))))...((((.(.......).)----------))).---.--. ( -24.70) >DroVir_CAF1 33291 114 - 1 AUGGCCACAAAGCAAACAUGACUUUGCAAUUAAGUUAUUGUUGGCCACAAGGCACCUGCCCGCA-UGCCCAUCUCAGAUCCAGGUAGUACCCAUGCGCUAUUUG---CCUCUAUCUA--U .((((((....(((...(((((((.......))))))))))))))))...((((..((....))-))))......(((..((((((((........))))))))---..))).....--. ( -27.30) >DroGri_CAF1 26809 117 - 1 AUGGCCACAAAGCAAACAUGACUUUGCAAUUAAGUUAUUGUUGGCCACAAGGCACUUGCCCGCA-UCACAGCUUGAAAUCCAAGUAG--CCAACUCGCCAUUUGCAGCCUCUAUCUGAGG (((((......(((((......)))))............((((((.....(((....)))....-.....(((((.....))))).)--)))))..)))))......((((.....)))) ( -31.80) >DroSec_CAF1 25353 99 - 1 CUGGCCACAAUGCAAACAUGACUUUGCAAUUAAGUUAUUGUCGGCCAGAAGGAACUAUCCGGCAGUCAUG------GGUCCUUGGAGUCUCACUUCGCC----------UCUU---U--U ((((((((((((((((......)))))).........)))).))))))..(((....)))((((((...(------(.((....)).))..)))..)))----------....---.--. ( -28.00) >DroSim_CAF1 32209 99 - 1 CUGGCCACAAUGCAAACAUGACUUUGCAAUUAAGUUAUUGUCGGCCAGAAGGAACUAUCCGGCAGUCAUG------GGUCCUUGGAGUCUCACUUCACC----------UCCU---U--U ((((((((((((((((......)))))).........)))).))))))(((((...(((((.......))------)))...(((((.....)))))..----------))))---)--. ( -27.60) >DroEre_CAF1 24922 98 - 1 CUGGCCACAAUGCAAACAUGACUUUGCAAUUAAGUUAUUGUCGGCCAGAAGGAACUAUCCGGCAGUCAUG-------GUCCUUGGAGUCUCACUUCGCC----------UCCU---U--U ((((((((((((((((......)))))).........)))).))))))(((((.((((.(....)..)))-------))))))((((.(.......).)----------))).---.--. ( -27.10) >consensus CUGGCCACAAUGCAAACAUGACUUUGCAAUUAAGUUAUUGUCGGCCAGAAGGAACUAUCCGGCAGUCAUG______GGUCCUUGGAGUCUCACUUCGCC__________UCCU___U__U ((((((((((((((((......)))))).........)))).))))))..(((....))).......................((((.....))))........................ (-17.40 = -18.23 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:21 2006