| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,216,648 – 27,216,750 |
| Length | 102 |
| Max. P | 0.518337 |
| Location | 27,216,648 – 27,216,750 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.82 |
| Mean single sequence MFE | -27.54 |
| Consensus MFE | -8.83 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.32 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27216648 102 + 27905053 AGUUCCCAACAGAGGU-----CUGGAUCCAAAUUUAAUAUAAAGACUGU---------GGAAAACUACAAGGAAUCAAGGAAUCAAGGUGUCCAGAGCUGUCCGUAAAUUGGGUUC ....((((((((...(-----((((((((.................(((---------((....)))))..((.((...)).))..)).))))))).))))........))))... ( -22.20) >DroSec_CAF1 30104 94 + 1 AGUUCCCAACAGAGGU-----CUGGAUCCAAAUUUAUAAGAAAGACUGU---------GGAAAACUACAAGGA--------AUCAAGGUGUCCAGAGCUGUCCGUAAAUUGGGUUC ....((((((((...(-----((((((((...(((....)))....(((---------((....)))))....--------.....)).))))))).))))........))))... ( -20.80) >DroSim_CAF1 31083 94 + 1 AGUUCCCAACAGAGGU-----CUGGAUCCAAAUUUAUAAGAAAGACUGU---------GGAAAACUACAAGGA--------AUCAAGGUGUCCAGAGCUGUCCGUAAAUUGGGUUC ....((((((((...(-----((((((((...(((....)))....(((---------((....)))))....--------.....)).))))))).))))........))))... ( -20.80) >DroEre_CAF1 33454 99 + 1 AGUUCCCAAAGGAGGUCGGCUCUGGAUCCGAAUUUAAUAGAAAGACUGU---------GGAAAACUACAAGGA--------AUCAAGGCGUCCAGUGCUGACCGUGAAUUGGGUUC ....(((((....(((((((.((((((((...(((....)))....(((---------((....)))))....--------.....)).)))))).))))))).....)))))... ( -33.50) >DroYak_CAF1 31124 99 + 1 AGCUCCCAGUAAAGAUCAGCUCUGGAUUCAAAAUUAUACGAAAGACUGU---------GGAAAACUACAAGGA--------AUCAAGGUUUUCAGAGCUGAUCGUAAACUGGGUUC ....((((((...(((((((((((((..(.........(....)..(((---------((....)))))....--------......)..)))))))))))))....))))))... ( -38.00) >DroAna_CAF1 33527 102 + 1 AGCUCA-AUUAGCCACCAGCUCUGGACCCGGACUAAUAGCAAAGACUGUCACAAGAGGGAAAAACUACAAGGA--------AUCGACCUGUCCAGAGCUGAACGUUAAUU-----U .....(-((((((...(((((((((((((......((((......)))).......)))..........(((.--------.....))).))))))))))...)))))))-----. ( -29.92) >consensus AGUUCCCAACAGAGGU_____CUGGAUCCAAAUUUAUAAGAAAGACUGU_________GGAAAACUACAAGGA________AUCAAGGUGUCCAGAGCUGACCGUAAAUUGGGUUC ....(((((....((......((((((((.........................................................)).))))))......)).....)))))... ( -8.83 = -9.40 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:49:44 2006