| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,205,155 – 3,205,247 |
| Length | 92 |
| Max. P | 0.937432 |
| Location | 3,205,155 – 3,205,247 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.25 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -10.27 |
| Energy contribution | -10.24 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3205155 92 - 27905053 C--GAGCAAACAAAGGGAGACAAAACAUGUGCA-AUAAAAAUGUGAAAAAUAAAAGAGAGCAAUUCGGUAACUAGCUCUCGUAGUUUGCCGUCCA (--(.((((((....(....)....(((((...-......)))))..........((((((.............))))))...)))))))).... ( -20.62) >DroVir_CAF1 31956 75 - 1 CCGUAGCAAAUAAAGCAAAAAAAAAUGCUGGCAAAUAAAAAUG---------GAGGAGA----CUCGA-------UUUUCAGAUUUUGGCCACGA .(((.........((((........))))(((.(((.(((((.---------(((....----))).)-------))))...)))...)))))). ( -18.90) >DroSec_CAF1 24540 92 - 1 C--GAGCAAACAAAGGGAGACAAAACAUGUGCA-AUAAAAAUGUGAAAAAUAAAAGAGAGCAAUUUCGUAACUAGCUCUCGUAGUUUGCCGUCCA (--(.((((((....(....)....(((((...-......)))))..........((((((.............))))))...)))))))).... ( -20.62) >DroSim_CAF1 31389 92 - 1 C--GAGCAAACAAAGGGAGACAAAACAUGUGCA-AUAAAAAUGUGAAAAAUAAAAGAGAGCAAUUCCGUAACUAGCUCUCGUAGUUUGCCGUCCA (--(.((((((....(....)....(((((...-......)))))..........((((((.............))))))...)))))))).... ( -20.62) >DroEre_CAF1 24144 92 - 1 C--GAGCAAACAAAGGGAGACAAAACAUGUGCA-AUAAAAAUGUGGAAAAUAAAAGAGUUCAAUUCCGUAACUAGCUCUCGUAGCUUGCCGUCCA (--(.((((.(...(((((.(...((((.....-......))))((((...............)))).......))))))...).)))))).... ( -14.26) >consensus C__GAGCAAACAAAGGGAGACAAAACAUGUGCA_AUAAAAAUGUGAAAAAUAAAAGAGAGCAAUUCCGUAACUAGCUCUCGUAGUUUGCCGUCCA ..............((.((((...((((............))))...........((((((.............))))))...)))).))..... (-10.27 = -10.24 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:20 2006