Locus 1011

Sequence ID 3R_DroMel_CAF1
Location 3,204,449 – 3,204,550
Length 101
Max. P 0.993824
window1637

overview

Window 7

Location 3,204,449 – 3,204,550
Length 101
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 91.47
Mean single sequence MFE -30.25
Consensus MFE -27.08
Energy contribution -27.82
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.94
Structure conservation index 0.89
SVM decision value 2.43
SVM RNA-class probability 0.993824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3204449 101 + 27905053
CCCCUACCGACCGCACUUACAAGCUGUUGGGCCCACAAAGCAGGCGUCCAAUAACUUAACACGCCCAUUUCCACCGCAAAACACGGCAUCUGCCGAGGGCC---------
......(((((.((........)).)))))((((........(((((.............)))))..................((((....)))).)))).--------- ( -29.52)
>DroSec_CAF1 23832 101 + 1
CCCCUGCCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCUCAUUCCCACCGCAAAACACGGCAUCUGCCGAGGGCC---------
.((((.......((......((((((((((((((........)).)))))))))))).....))...................((((....))))))))..--------- ( -30.90)
>DroSim_CAF1 30685 101 + 1
CCCCUGUCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCCCAUUCCCACCGCAAAACACGGCAUCUGCCGAGGGCC---------
....................((((((((((((((........)).)))))))))))).....((((.........(.....).((((....)))).)))).--------- ( -30.80)
>DroEre_CAF1 23432 110 + 1
CCCCCGCCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCCCAUUCCCACCGCAAAACACCGCAUCUGCCGAGGGGCAUCCACAUC
(((((((.((..((......((((((((((((((........)).)))))))))))).....((...........))........)).)).).)).)))).......... ( -29.80)
>consensus
CCCCUGCCGACCGCACUUACAAGUUGUUGGGCCCACAAAACAGGCGUCCAAUAACUUAACACGCCCAUUCCCACCGCAAAACACGGCAUCUGCCGAGGGCC_________
.((((.......((......((((((((((((((........)).)))))))))))).....))...................((((....))))))))........... (-27.08 = -27.82 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006