Locus 10103

Sequence ID 3R_DroMel_CAF1
Location 27,078,346 – 27,078,453
Length 107
Max. P 0.746324
window16085

overview

Window 5

Location 27,078,346 – 27,078,453
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 89.81
Mean single sequence MFE -35.42
Consensus MFE -25.70
Energy contribution -26.26
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -2.08
Structure conservation index 0.73
SVM decision value 0.46
SVM RNA-class probability 0.746324
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27078346 107 + 27905053
AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUAAAACGUAGCACUAGAAGUGUGCAACGUAAGGCGACAAAGUCUGCAACCUUAAAACGGUAG
.(((((((((((((((.....((.((((..(....)...))))))....((((.((((.......)))).)))).((((......)))))))))))).))))))).. ( -43.80)
>DroSec_CAF1 14924 107 + 1
AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCGGCCGGCUAAAACGUAGCACUAGAGGUGGGCAACAUAAGGUGACAAGGUCUGCAACAUUAAAACGGUAG
.(((((((...((((((((.((((((....)))....(.(((.((((.....))))......))).))))......(....)...)).))))))....))))))).. ( -35.00)
>DroSim_CAF1 16075 107 + 1
AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUAAAACGUAGCACUAGAGGUGGGCAACGUAAGGUGACAAGGUCUGCAACAUUAAAACGGUAG
.(((((((...((((((((((..(((....)))...((.(((.((((.....))))......)))..)).))))..(....)......))))))....))))))).. ( -35.90)
>DroEre_CAF1 15153 106 + 1
AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUA-AACGUAUCAGUAAAGGUGGGUAACGUAAGGCGGCAAAGGCUAUAACAUUAAAACGGAAC
.(((((((.(.(((((....((((((....)))...))).(((.((.-.((......))..)).)))))))).).)))))))......................... ( -29.30)
>DroYak_CAF1 15219 107 + 1
AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCGGCCGGCUAAAACGUAUCACUAGAGGUGGGUAACGUAAGGUGGCUAAGACGGUAAUAUUCAAACGGAAC
.(((((((..((((((.......(((....)))...))))))(((((..((((.((((.....))))...))))....))))).)))))))................ ( -33.10)
>consensus
AGCUGUUUAGGGUUGCAACGUGCGCGGUGACGCAAGGCAGCCGGCUAAAACGUAGCACUAGAGGUGGGCAACGUAAGGUGACAAAGUCUGCAACAUUAAAACGGUAG
.(((((((..((((((....((((......))))..)))))).(((...((((.((((.....))))...))))..)))...................))))))).. (-25.70 = -26.26 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:57 2006