| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,203,782 – 3,203,876 |
| Length | 94 |
| Max. P | 0.620363 |
| Location | 3,203,782 – 3,203,876 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.56 |
| Mean single sequence MFE | -20.38 |
| Consensus MFE | -16.49 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3203782 94 - 27905053 ACUUGCCACUCUCAAAGUUUUCCCACAAUGCUAAGGCGUCCUUGUAUGGAAACUCGACUUGUUUAAAAAA---AAAAAGAAAGGGGUGGCCACAAAA ....((((((((...(((((((..(((((((....))))...)))..)))))))...(((.(((.....)---)).)))...))))))))....... ( -21.60) >DroSec_CAF1 23164 96 - 1 ACUUGCCACUCUCAAAGUUUUCCCACAAUGCUAAGGCGUCCUUGUAUGGAAACUCGACUUGUUUAAAAAA-AAAAAAAGAAAGGGGUGGCCACGAAA ....((((((((...(((((((..(((((((....))))...)))..)))))))...(((.(((.....)-))...)))...))))))))....... ( -21.40) >DroSim_CAF1 30017 97 - 1 ACUUGCCACUCUCAAAGUUUUCCCACAAUGCUAAGGCGUCCUUGUAUGGAAACUCGACUUGUUUAAAAAAAAAAAAAAGAAAGGGGUGGCCACGAAA ....((((((((...(((((((..(((((((....))))...)))..)))))))...(((.(((........))).)))...))))))))....... ( -21.60) >DroEre_CAF1 22748 86 - 1 ACUUGCCACUCUCAAACUUUUUCCACAAUGCCAAGGCGCCUUUGUAUGGAAACUCCACUUGUUGAAAAA-----------AAGGGGUUGCCACAAAU ....((.(((((.....((((((.(((((((.(((....))).)))(((.....))).)))).))))))-----------..))))).))....... ( -16.90) >consensus ACUUGCCACUCUCAAAGUUUUCCCACAAUGCUAAGGCGUCCUUGUAUGGAAACUCGACUUGUUUAAAAAA___AAAAAGAAAGGGGUGGCCACAAAA ....(((((((....(((((((..(((((((....)))...))))..)))))))...(((....................))))))))))....... (-16.49 = -16.80 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:17 2006