Locus 10068

Sequence ID 3R_DroMel_CAF1
Location 26,962,561 – 26,962,652
Length 91
Max. P 0.784900
window16034

overview

Window 4

Location 26,962,561 – 26,962,652
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.12
Mean single sequence MFE -26.41
Consensus MFE -13.57
Energy contribution -13.60
Covariance contribution 0.03
Combinations/Pair 1.31
Mean z-score -2.24
Structure conservation index 0.51
SVM decision value 0.57
SVM RNA-class probability 0.784900
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26962561 91 - 27905053
CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCAGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUA----UGUACAU
..----.....((((((((....................))))))))---((((((....((((((....))))))....))))))((((.----...)))) ( -29.25)
>DroSec_CAF1 10115 91 - 1
CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUA----UGUACAU
..----.....(((((((......................)))))))---((((((....((((((....))))))....))))))((((.----...)))) ( -28.75)
>DroSim_CAF1 10418 95 - 1
CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUAUGUAUGUACAU
..----.....(((((((......................)))))))---((((((....((((((....))))))....))))))((((((....)))))) ( -31.65)
>DroEre_CAF1 12235 87 - 1
CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGGUCUUACAUCUGCAUUUUUGCGGACUAUACAGGGAUGUG----UGU----
..----..((((((((((......................)))))))---.)))......((((((....)))))).((((((....))))----)).---- ( -22.65)
>DroYak_CAF1 10143 87 - 1
CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUUUACACGGCUGUU----UGU----
.(----((((.(((((((......................)))))))---.(((((....((((((....))))))......))))).)))----)).---- ( -26.55)
>DroAna_CAF1 10820 82 - 1
CCCCAAAAACUCGACAGUAAAAAUGUCUGAGGCCACUUCGACUGCAGGGUGGCUGUUACAACUGAAUUUUUGUGUGCUAU----------------GU----
...((((((.((((((.......))))...(((((((..(....)..))))))).........)).))))))........----------------..---- ( -19.60)
>consensus
CC____AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA___CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUA____UGU____
...........(((((((......................))))))).............((((((....)))))).......................... (-13.57 = -13.60 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:10 2006