Locus 10063

Sequence ID 3R_DroMel_CAF1
Location 26,958,885 – 26,958,980
Length 95
Max. P 0.973076
window16028

overview

Window 8

Location 26,958,885 – 26,958,980
Length 95
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 72.73
Mean single sequence MFE -28.59
Consensus MFE -15.47
Energy contribution -17.63
Covariance contribution 2.17
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.54
SVM decision value 1.70
SVM RNA-class probability 0.973076
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26958885 95 - 27905053
GCUGCCUGCAGACUGUCAAAGUCAUUGUCACUCUGCCGGGGGCUAUGG------CUCUAAACAAU-CACAAAAACUAC---GCCG-GGAUACCCCU-UGCCCUUU--------CA
....((.(((((.((.(((.....))).)).))))).))((((...((------(..........-............---)))(-((....))).-.))))...--------.. ( -27.45)
>DroSec_CAF1 6467 95 - 1
GCUGCCUGCAGACUGUCAAAAUCAUUGUCAGUCUGCCGGGGGCUAUGG------CUCUACACAAU-CACAAAAACUAC---GCCG-AGAUACCCCU-UACCCUUU--------CA
.......((((((((.(((.....))).)))))))).((((.((.(((------(..........-............---))))-))...)))).-........--------.. ( -28.25)
>DroSim_CAF1 6751 88 - 1
GCUGCC-------UGUCAAAGUCAUUGUCAGUCUGCCGGGGGCUAUGG------CUCUACACAAU-CACAAAAACUAC---GCCG-GAAUACCCCU-UACCCUUU--------CA
((.(.(-------((.(((.....))).))).).)).((((....(((------(..........-............---))))-.....)))).-........--------.. ( -18.15)
>DroEre_CAF1 8642 97 - 1
GCUGCCUGCAGACUGUCAAAGUCAUUGUCAGUCUGCCGGUGGCUAUG-------------ACAAU-CACAAAAGCUGU---GCCG-GGAUACCCUUUUACCCUUUCAGCCGUUCA
((..((.((((((((.(((.....))).)))))))).))..))....-------------.....-.......((((.---...(-((...........)))...))))...... ( -34.40)
>DroYak_CAF1 6512 89 - 1
GCUGCCUGCAGACUGACAAAGUCAUUGUCAGUGUGCCGG-GGCUAUG-------------ACAAU-CACUAGAACUGU---GCCGGGGAUACCCUUUUACCCUUU--------CA
(((.((.(((.((((((((.....)))))))).))).))-)))....-------------.....-.....(((..((---(..((((...))))..)))...))--------). ( -27.80)
>DroAna_CAF1 6516 89 - 1
GCUACCUGCAGACUGUCA-AGUCAUUGUGUGUCGGCCCGGGGCUAUGGCUCUGGCUCUACACAAUUUGCAAAAACUGGCAGGCGG-GUCUU------------------------
...((((((.((((....-))))((((((((..((((.(((((....))))))))).))))))))((((........))))))))-))...------------------------ ( -35.50)
>consensus
GCUGCCUGCAGACUGUCAAAGUCAUUGUCAGUCUGCCGGGGGCUAUGG______CUCUACACAAU_CACAAAAACUAC___GCCG_GGAUACCCCU_UACCCUUU________CA
(((.((.((((((((.(((.....))).)))))))).)).)))........................................................................ (-15.47 = -17.63 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:05 2006