| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,200,197 – 3,200,289 |
| Length | 92 |
| Max. P | 0.919275 |
| Location | 3,200,197 – 3,200,289 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.57 |
| Mean single sequence MFE | -24.12 |
| Consensus MFE | -22.42 |
| Energy contribution | -22.30 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3200197 92 - 27905053 GUAAACUGAUGGCACUCUAUUCUGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... ( -22.30) >DroSec_CAF1 19659 92 - 1 GUAAACUGAUGGCACUCCAUUCUGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... ( -24.60) >DroSim_CAF1 26500 92 - 1 GUAAACUGAUGGCACUCCAUUCAGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... ( -24.60) >DroEre_CAF1 19290 91 - 1 GUAAGCUGGUGGCACUCUAUUCCGUAGGGGUGUUGAAUACCACUGAUACGACACA-UGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .(((((((((((((.....(((((((...((((((.((.......)).)))))).-)))))))..))).....))))))))))......... ( -25.00) >consensus GUAAACUGAUGGCACUCCAUUCUGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... (-22.42 = -22.30 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:11 2006