Locus 10057

Sequence ID 3R_DroMel_CAF1
Location 26,948,817 – 26,948,937
Length 120
Max. P 0.500000
window16020

overview

Window 0

Location 26,948,817 – 26,948,937
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.58
Mean single sequence MFE -45.87
Consensus MFE -36.00
Energy contribution -34.80
Covariance contribution -1.20
Combinations/Pair 1.34
Mean z-score -1.48
Structure conservation index 0.78
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26948817 120 + 27905053
AUUGUUGGGCGAUCAUUCGCAGUUGGUUAACCAGCACGUUACCAUCCGCCGUGUUGCCCGUGGCGCAACAGGCAAUGUUCUCGUUCAACCACGAGAUUCUUGGCACAGGAAUACUGGUGU
...(((((((((.((((....(((((....)))))............(((.(((((((....).)))))))))))))...)))))))))(((.(((((((((...))))))).)).))). ( -43.60)
>DroSec_CAF1 16483 120 + 1
AUUGUUGGGUGCUCAAUCGCAGUUGGGCAACCAGCACGUUACCAUCCGCCAUGUUGCCCGUGGCGCAACAGGCCAUGUCCUCGUUCAACGUCGAGAUUCUUGGCACGGGAAUACUGGUGU
..((((((.((((((((....)))))))).))))))...(((((...(((.(((((((....).)))))))))....(((.(((.....((((((...))))))))))))....))))). ( -44.80)
>DroSim_CAF1 16538 120 + 1
AUUGUUGGCUGCUCAAUCGCAGUUGGGCAACCAGCACGUUACCAUCCGCCAUGUUGCCCGUGGCGCAACAGGCCAUGUCCUCGUUCAACGACGAGAUUCUUGGCACAGGAAUACUGGUGU
..((((((.((((((((....)))))))).))))))...((((((((((((((.....)))))).......((((.(..((((((....))))))...).))))...)))....))))). ( -46.80)
>DroEre_CAF1 19158 120 + 1
AUUGUUGGGCGAUCAGGCGCAAUUCGGUGGUCAGCACGUUUCCAUCCGCCUUGUUGCCCGUGGCGCAACAGGCAGCGUCCUCGUUCAGCCUGCAGAUCCUGGGCGCAGGAAUGCUCGAGU
...(((((((((...(((((.....(((((...........))))).((((.((((((....).))))))))).))))).)))))))))..(((..(((((....))))).)))...... ( -47.70)
>DroYak_CAF1 16983 120 + 1
AUUGCUGGGCGAUGAGUCGCAACUCGGUGGUCAGCACGUUUCCAUCCGCCGUGUUGCCCGUGGCGCAACACGCAUUGUCCUCGUUCAACCUGCAGAUCCUGGGCGCAGGAAUGCUGGAGU
...(((((((((((....(((((.((((((...............)))))).))))).((((......))))))))))))........((.(((..(((((....))))).))).))))) ( -46.46)
>consensus
AUUGUUGGGCGAUCAAUCGCAGUUGGGUAACCAGCACGUUACCAUCCGCCAUGUUGCCCGUGGCGCAACAGGCAAUGUCCUCGUUCAACCUCGAGAUUCUUGGCACAGGAAUACUGGUGU
..((((((.((((((((....)))))))).))))))...(((((((((((.(((((((....).)))))))))..((((.....((........)).....))))..)))....))))). (-36.00 = -34.80 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:57 2006