Locus 1003

Sequence ID 3R_DroMel_CAF1
Location 3,192,413 – 3,192,533
Length 120
Max. P 0.859067
window1623

overview

Window 3

Location 3,192,413 – 3,192,533
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -44.70
Consensus MFE -44.31
Energy contribution -44.53
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -1.84
Structure conservation index 0.99
SVM decision value 0.82
SVM RNA-class probability 0.859067
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3192413 120 - 27905053
AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGUCAGCCAAGCGGGAACUUGAUAAGGACAAAAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC
..((.(((((.(((.((((((.(((((((.....))).))))(..((.....))..).)))))).))).)))))....(((..((((((.....)))))).))).....))......... ( -38.30)
>DroSec_CAF1 11922 120 - 1
AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGGCAGCCAGACGAGAACUUGAUAAGGACAAGAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC
.....(((((.(((.((((((.(((((((.....))).))))((((((...)))))).)))))).))).)))))..(((.(((((((((.....)))))....((....)).)))).))) ( -47.90)
>DroSim_CAF1 18649 120 - 1
AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGGCAGCCAGACGAGAACUUGAUAAGGACAAGAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC
.....(((((.(((.((((((.(((((((.....))).))))((((((...)))))).)))))).))).)))))..(((.(((((((((.....)))))....((....)).)))).))) ( -47.90)
>consensus
AACCGGUCCUGGUCUGGUUCUAUGAGCACGGUGUGUGUCUCAGUCUGGCAGCCAGACGAGAACUUGAUAAGGACAAGAGGUUCGAUGCCUUUCUGGCGUUUACCCAUAAGGACGAGGCUC
.....(((((.(((.((((((.(((((((.....))).))))(((((.....))))).)))))).))).)))))..(((.(((((((((.....)))))....((....)).)))).))) (-44.31 = -44.53 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:05 2006