| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,829,629 – 26,829,730 |
| Length | 101 |
| Max. P | 0.764921 |
| Location | 26,829,629 – 26,829,730 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.31 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26829629 101 + 27905053 CUGAAUGAAGCGCUCGAAUUCUCUUCUCCCUGCACUUUUAUAUA-UUUCCUUUUUCUCUGCUUGCUAUCUACUACCCAGCAGGCAGACCACGAGGUG--GGCGU .........(((((((((.....)))..................-...((((....((((((((((...........))))))))))....)))).)--))))) ( -26.00) >DroSec_CAF1 38014 101 + 1 CCGAAUGAAGCGCUUGAACUCUCUCCUCCCUGCACUUCUAUAUA-UUUCCUUAUUCUCUGCUUGCUAUCUACUACCCAGCAGGCAGACCACGAGGUG--GGCGU (((...((((.((..((.........))...)).))))......-...(((..(..((((((((((...........))))))))))..)..)))))--).... ( -25.10) >DroSim_CAF1 38972 101 + 1 CCGAAUGAAGCGCUCGAACUCUCUCCUCCCUGCACUUCUAUAUA-UUUCCUUAUUCUCUGCUUGCUAUCUACUACCCAGCAGGCAGACCACGAGGUG--GGCGU .........((((((((....)).....................-...(((..(..((((((((((...........))))))))))..)..))).)--))))) ( -25.50) >DroEre_CAF1 42777 101 + 1 CUGAAUGAAGCGCUCGAAUUCUCUCCGUCCUGCACUUUUAUAUA-UUUCCUUAUUCCCUGCCUGCUAUCUACUACCCAGCAGGCGGACCAUGAGGUG--GGCGU .........(((((((...((((...((((...........(((-......))).....(((((((...........)))))))))))...))))))--))))) ( -28.10) >DroYak_CAF1 49219 84 + 1 CUGAAUGAAGC-----------------CCUGCACUUUUAUAUA-UUUCCUUAUUCUCCGCUCGCUAUCUACGACCCAGCAGGCAGGCCACGAGGUG--GGCGU .........((-----------------((..............-..............((..(((...........)))..))..(((....))))--))).. ( -16.50) >DroAna_CAF1 43339 97 + 1 UUCUGUGGAG--CCUGGACCUCCUUUUCUCUAC-UUUCCAUACAAAUUCUUUUCUCUCAGCUUGCUAUCUUCCACCCAGCAGGC----CAUGAGAUGUCGAAAU ....((((((--...((....))....))))))-............(((...((((...(((((((...........)))))))----...))))....))).. ( -23.00) >consensus CUGAAUGAAGCGCUCGAACUCUCUCCUCCCUGCACUUCUAUAUA_UUUCCUUAUUCUCUGCUUGCUAUCUACUACCCAGCAGGCAGACCACGAGGUG__GGCGU ......((((.((..................)).))))..........((((....((((((((((...........))))))))))....))))......... (-14.64 = -15.50 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:17 2006