Locus 1002

Sequence ID 3R_DroMel_CAF1
Location 3,191,807 – 3,191,927
Length 120
Max. P 0.724429
window1622

overview

Window 2

Location 3,191,807 – 3,191,927
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.67
Mean single sequence MFE -40.52
Consensus MFE -37.72
Energy contribution -38.16
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.29
Structure conservation index 0.93
SVM decision value 0.41
SVM RNA-class probability 0.724429
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3191807 120 - 27905053
UCCGACAGGUUUCCGGGUCAACUGGUUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA
.......(((..((((.....)))).......((..(((((((....)).....((((.((.....))))))...)))))......(((....))).....)).(((......)))))). ( -38.80)
>DroSec_CAF1 11345 120 - 1
UCCGACAGGUUUCCGGGUCAACUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA
.......(((....((((....((((((.((.....(((((((....)).....((((.((.....))))))...)))))......(((....))).....))..)))))).))))))). ( -41.20)
>DroSim_CAF1 18035 120 - 1
UCCGACAGGUUUCCGGGUCAACUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA
.......(((....((((....((((((.((.....(((((((....)).....((((.((.....))))))...)))))......(((....))).....))..)))))).))))))). ( -41.20)
>DroEre_CAF1 13103 120 - 1
UCCGACAGGCUUCCGGGUCAACUGACUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA
.......((((((.(((((....)))))....((..(((((((....)).....((((.((.....))))))...)))))......(((....))).....)).)))))).......... ( -39.70)
>DroYak_CAF1 16742 120 - 1
UCCGACAGGUGUCCUGGUCAGUUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA
.......((((...(((((.(((((((....)))..(((((((....)).....((((.((.....))))))...)))))......(((....)))...))))...)))))....)))). ( -41.70)
>consensus
UCCGACAGGUUUCCGGGUCAACUGGCUUAGCAGCAAGGACCGCAACCGCAAAAACUGCUGGUGCCGCCGCAGCAAGGUCCACAUCCUCCGCAAGGACCACAGCAGGGGCCACACCCACCA
.......(((....((((....((((((.((.....(((((((....)).....((((.((.....))))))...)))))......(((....))).....))..)))))).))))))). (-37.72 = -38.16 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:04 2006