Locus 1

Sequence ID 3R_DroMel_CAF1
Location 47,662 – 47,756
Length 94
Max. P 0.954669
window1

overview

Window 1

Location 47,662 – 47,756
Length 94
pre Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 78.72
Mean single sequence MFE -32.14
Consensus MFE -17.95
Energy contribution -18.98
Covariance contribution 1.03
Combinations/Pair 1.28
Mean z-score -2.60
Structure conservation index 0.56
SVM decision value 1.45
SVM RNA-class probability 0.954669
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 47662 94 - 27905053
GCUCAAAUGUUCACGUAGUAUGAUUGGACGCCCUAGGGCGUCCCUUACCUUUACACAGCUCGGUGAGGAGCAAGUACUGGGCUCCCAAUUGAGU
((((((.(((((.............(((((((....)))))))((((((............))))))))))).....(((....))).)))))) ( -35.20)
>DroSec_CAF1 30536 94 - 1
GCUCAAAUGUACACCCAGUAUGAUUGGGCGCCUUAGGGCGUCACUUACCUUUACACAGCUCGGUGAGGAGCAAGUACUGGGCUCCCAAUUGAGC
((((((.((....((((((((..(((((((((....)))))).((((((............))))))...)))))))))))....)).)))))) ( -38.20)
>DroSim_CAF1 25181 94 - 1
GCUCAAAUGUACACCCAGUAUGAUUGGGCGCCUUAGGGCGUCACUUACCUUUACACAGCUCGGUGAGGAGCAAGUGCUGGGCUCCCAAUUGAGC
((((((.((....((((((((..(((((((((....)))))).((((((............))))))...)))))))))))....)).)))))) ( -38.20)
>DroEre_CAF1 42338 94 - 1
GCUCAAAUGUACAUACAGUAUGAUUGGACGCCCUAAGGCGCCACUUACCUUUACACAGCUCGGUGAGGAGGAAGUACUGAGCUCCCAAUUGAGA
.(((((.((......((((((...(((.((((....)))))))....((((..(((......)))..))))..))))))......)).))))). ( -29.50)
>DroYak_CAF1 43404 94 - 1
GCUCAAGUGUACAUACUGUAUGAUUGGACGCUCUAAGGCGCCACUUACCUUUACACAGCUCGGUGAGAAGCAGGUACUGAGCUCCUAAUUGAGC
(((((((((((((((...))))..(((.((((....)))))))........)))))(((((((((.........))))))))).....)))))) ( -30.30)
>DroAna_CAF1 42029 76 - 1
ACUAAA-UA-----CUAGUA------------CUAAGUGAUAUCAUACCUUUACAGAGCUCCGAGAGGAGCAGGUACUGAGCUCCCUGAUUGGA
......-..-----(((((.------------...((.((..((((((((.......(((((....)))))))))).)))..)).)).))))). ( -21.41)
>consensus
GCUCAAAUGUACACCCAGUAUGAUUGGACGCCCUAAGGCGUCACUUACCUUUACACAGCUCGGUGAGGAGCAAGUACUGAGCUCCCAAUUGAGC
((((((...........(((....(((.((((....)))))))..)))........(((((((((.........))))))))).....)))))) (-17.95 = -18.98 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006